JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSRNP2_chr12_51056205_51088596	0/0	t0026	2886	1	0	0	1	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0027	2886	1	1	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0028	2886	1	1	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0029	2873	1	0	0	1	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0030	2886	1	0	0	0	0	1	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0031	2886	1	1	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP3_chr2_165464698_165694407	0/1	t0001	9973	27	2	5	16	1	2	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0002	9982	19	1	8	9	0	1	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	1/0	t0003	9980	15	8	1	5	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0004	9981	13	0	1	10	0	2	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0005	9971	10	2	1	5	0	2	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0006	9971	8	0	5	0	2	1	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0007	9978	6	5	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0008	9975	6	0	1	2	0	3	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0009	9978	6	2	2	1	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0010	9981	6	4	1	0	0	1	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0011	9984	6	3	1	0	0	2	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0012	9969	5	2	2	0	0	1	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0013	9986	5	4	0	0	0	1	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0014	9971	4	3	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0015	9986	4	0	2	2	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0016	9989	4	0	0	4	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0017	9970	4	4	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0018	9983	3	2	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0019	9973	3	0	1	2	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0020	9979	3	0	2	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0021	9981	3	2	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0022	9984	3	3	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0023	9980	2	0	0	2	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0024	9983	2	0	1	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0025	9986	2	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0026	9986	2	2	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0027	9985	2	0	0	2	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0028	9988	2	2	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0029	9988	2	0	0	2	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0030	9990	1	1	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0031	9971	1	0	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0032	9981	1	1	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0033	9985	1	1	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0034	9985	1	1	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0035	9985	1	1	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0036	9983	1	1	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0037	9970	1	1	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0038	9969	1	1	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0039	9970	1	0	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0040	9973	1	0	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0041	9973	1	0	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0042	9972	1	0	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0043	9973	1	0	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0044	9978	1	0	0	0	0	1	copy fasta	CSRNP3	chr2	165464698	165694407