JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
CSRNP3_chr2_165464698_165694407	0/0	t0045	9972	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0046	9980	1	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0047	9978	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0048	9978	1	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0049	9978	1	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0050	9982	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0051	9978	1	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0052	9978	1	0	0	0	1	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0053	9982	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0054	9980	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0055	9981	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0056	9980	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0057	9981	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0058	9980	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0059	9980	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0060	9984	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0061	9983	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0062	9982	1	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0063	9982	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0064	9984	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0065	9980	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0066	9987	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0067	9985	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0068	9985	1	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0069	9985	1	0	0	0	1	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0070	9984	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0071	9986	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0072	9987	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0073	9985	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0074	9990	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0075	9988	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0076	9986	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0077	9989	1	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0078	9989	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0079	9991	1	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0080	9988	1	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0081	9994	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0082	9996	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0083	9991	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0084	9992	1	0	0	0	1	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0085	9995	1	0	0	0	1	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0086	9998	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0087	9994	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0088	9993	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0089	9995	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0090	9996	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0091	9978	1	0	0	0	1	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0092	9982	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0093	9975	1	0	0	1	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0094	9967	1	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407