JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSRNP3_chr2_165464698_165694407	0/0	t0095	9983	1	1	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0096	9978	1	1	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0097	9980	1	1	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	t0098	9977	1	1	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRP1_chr1_201478530_201512123	0/1	t0001	1238	340	70	69	154	12	34	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	1/0	t0002	1238	68	15	4	41	4	3	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0003	1238	5	4	1	0	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0004	1238	4	2	2	0	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0005	1238	2	0	0	0	0	2	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0006	1238	2	2	0	0	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0007	1238	1	0	0	1	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0008	1238	1	1	0	0	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0009	1238	1	1	0	0	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0010	1238	1	0	0	1	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0011	1238	1	1	0	0	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0012	1238	1	0	1	0	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0013	1255	1	0	0	1	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0014	1238	1	0	0	1	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0015	1238	1	0	1	0	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0016	1238	1	0	0	1	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	t0017	1238	1	0	0	0	0	1	copy fasta	CSRP1	chr1	201478530	201512123
CSRP2_chr12_76853709_76884019	1/1	t0001	326	377	88	81	154	16	36	copy fasta	CSRP2	chr12	76853709	76884019
CSRP2_chr12_76853709_76884019	0/0	t0002	326	4	4	0	0	0	0	copy fasta	CSRP2	chr12	76853709	76884019
CSRP2_chr12_76853709_76884019	0/0	t0003	326	3	3	0	0	0	0	copy fasta	CSRP2	chr12	76853709	76884019
CSRP2_chr12_76853709_76884019	0/0	t0004	326	1	0	0	0	0	1	copy fasta	CSRP2	chr12	76853709	76884019
CSRP2_chr12_76853709_76884019	0/0	t0005	326	1	1	0	0	0	0	copy fasta	CSRP2	chr12	76853709	76884019
CSRP2_chr12_76853709_76884019	0/0	t0006	326	1	0	1	0	0	0	copy fasta	CSRP2	chr12	76853709	76884019
CSRP2_chr12_76853709_76884019	0/0	t0007	326	1	0	0	0	0	1	copy fasta	CSRP2	chr12	76853709	76884019
CSRP3_chr11_19177030_19206983	1/1	t0001	699	398	92	68	185	13	38	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	t0002	699	11	0	4	1	3	3	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	t0003	699	3	3	0	0	0	0	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	t0004	699	1	0	0	1	0	0	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	t0005	699	1	1	0	0	0	0	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	t0006	699	1	0	0	0	0	1	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	t0007	699	1	0	0	1	0	0	copy fasta	CSRP3	chr11	19177030	19206983
CST11_chr20_23445412_23457876	1/1	t0001	160	439	91	71	225	12	38	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	t0002	160	6	5	1	0	0	0	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	t0003	160	1	0	0	1	0	0	copy fasta	CST11	chr20	23445412	23457876
CST1_chr20_23742562_23755935	0/0	t0001	324	239	53	37	127	5	17	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	t0002	324	97	18	16	42	4	17	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	1/1	t0003	324	71	0	20	28	9	12	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	t0004	324	31	6	6	19	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	t0005	324	7	6	1	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	t0006	324	6	0	0	6	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	t0007	324	5	4	1	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	t0008	324	3	3	0	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	t0009	324	3	0	2	1	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	t0010	324	2	2	0	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	t0011	324	2	0	1	1	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	t0012	324	1	1	0	0	0	0	copy fasta	CST1	chr20	23742562	23755935