JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CST1_chr20_23742562_23755935	0/0	t0013	324	1	0	0	1	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	t0014	324	1	1	0	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	t0015	324	1	1	0	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	t0016	324	1	1	0	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	t0017	324	1	0	0	1	0	0	copy fasta	CST1	chr20	23742562	23755935
CST2_chr20_23818769_23831729	1/0	t0001	321	324	52	64	168	13	26	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/1	t0002	321	96	29	11	41	3	11	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	t0003	300	37	3	6	21	0	7	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	t0004	321	5	4	1	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	t0005	321	3	3	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	t0006	321	1	1	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	t0007	321	1	0	1	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	t0008	321	1	0	1	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	t0009	321	1	1	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	t0010	321	1	1	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST3_chr20_23628657_23642955	1/1	t0001	353	316	82	67	127	13	25	copy fasta	CST3	chr20	23628657	23642955
CST3_chr20_23628657_23642955	0/0	t0002	353	71	13	8	29	1	20	copy fasta	CST3	chr20	23628657	23642955
CST3_chr20_23628657_23642955	0/0	t0003	368	27	0	0	27	0	0	copy fasta	CST3	chr20	23628657	23642955
CST3_chr20_23628657_23642955	0/0	t0004	353	2	0	0	0	1	1	copy fasta	CST3	chr20	23628657	23642955
CST3_chr20_23628657_23642955	0/0	t0005	353	2	0	1	0	1	0	copy fasta	CST3	chr20	23628657	23642955
CST3_chr20_23628657_23642955	0/0	t0006	353	1	1	0	0	0	0	copy fasta	CST3	chr20	23628657	23642955
CST3_chr20_23628657_23642955	0/0	t0007	367	1	0	0	1	0	0	copy fasta	CST3	chr20	23628657	23642955
CST4_chr20_23680640_23694038	1/1	t0001	324	238	15	43	147	13	18	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	t0002	324	79	32	18	24	1	4	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	t0003	324	76	25	13	21	0	17	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	t0004	324	54	23	4	19	0	8	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	t0005	324	1	0	0	0	0	1	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	t0006	324	1	1	0	0	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	t0007	324	1	0	0	1	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	t0008	324	1	0	0	1	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	t0009	324	1	0	0	1	0	0	copy fasta	CST4	chr20	23680640	23694038
CST5_chr20_23870934_23884748	0/1	t0001	327	251	62	51	107	7	23	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	1/0	t0002	327	193	34	31	98	9	20	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	0/0	t0003	327	1	0	0	0	0	1	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	0/0	t0004	327	1	0	0	1	0	0	copy fasta	CST5	chr20	23870934	23884748
CST6_chr11_66007008_66018505	1/1	t0001	143	413	94	70	187	16	44	copy fasta	CST6	chr11	66007008	66018505
CST6_chr11_66007008_66018505	0/0	t0002	143	1	0	0	1	0	0	copy fasta	CST6	chr11	66007008	66018505
CST7_chr20_24944269_24964928	0/0	t0001	454	196	17	36	107	9	27	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	1/0	t0002	454	69	40	15	0	3	10	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/1	t0003	454	35	5	8	16	1	4	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	t0004	454	25	10	11	0	3	1	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	t0005	451	10	10	0	0	0	0	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	t0006	454	4	0	0	4	0	0	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	t0007	454	2	2	0	0	0	0	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	t0008	454	2	2	0	0	0	0	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	t0009	454	2	2	0	0	0	0	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	t0010	454	2	2	0	0	0	0	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	t0011	454	1	0	0	1	0	0	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	t0012	454	1	1	0	0	0	0	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	t0013	454	1	1	0	0	0	0	copy fasta	CST7	chr20	24944269	24964928