JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CST8_chr20_23486117_23501010	1/1	t0001	466	420	82	77	201	16	42	copy fasta	CST8	chr20	23486117	23501010
CST8_chr20_23486117_23501010	0/0	t0002	466	9	8	1	0	0	0	copy fasta	CST8	chr20	23486117	23501010
CST8_chr20_23486117_23501010	0/0	t0003	466	8	7	1	0	0	0	copy fasta	CST8	chr20	23486117	23501010
CST8_chr20_23486117_23501010	0/0	t0004	466	1	0	1	0	0	0	copy fasta	CST8	chr20	23486117	23501010
CST8_chr20_23486117_23501010	0/0	t0005	466	1	1	0	0	0	0	copy fasta	CST8	chr20	23486117	23501010
CST8_chr20_23486117_23501010	0/0	t0006	466	1	0	0	1	0	0	copy fasta	CST8	chr20	23486117	23501010
CST9L_chr20_23559732_23573484	1/1	t0001	251	387	89	60	185	12	39	copy fasta	CST9L	chr20	23559732	23573484
CST9L_chr20_23559732_23573484	0/0	t0002	251	2	2	0	0	0	0	copy fasta	CST9L	chr20	23559732	23573484
CST9L_chr20_23559732_23573484	0/0	t0003	251	1	0	0	0	0	1	copy fasta	CST9L	chr20	23559732	23573484
CST9L_chr20_23559732_23573484	0/0	t0004	251	1	0	0	1	0	0	copy fasta	CST9L	chr20	23559732	23573484
CST9L_chr20_23559732_23573484	0/0	t0005	251	1	1	0	0	0	0	copy fasta	CST9L	chr20	23559732	23573484
CST9_chr20_23597410_23610917	0/1	t0001	1154	190	7	35	121	14	12	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	t0002	1154	76	6	22	38	0	10	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	t0003	1154	61	4	9	26	2	20	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	t0004	1154	53	48	5	0	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	t0005	1154	26	22	4	0	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	t0006	1154	4	0	0	4	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	t0007	1154	2	2	0	0	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	t0008	1154	2	2	0	0	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	t0009	1154	1	1	0	0	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	1/0	t0010	1154	1	0	0	0	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	t0011	1154	1	0	1	0	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	t0012	1154	1	0	0	1	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	t0013	1154	1	0	0	1	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	t0014	1154	1	0	0	1	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	t0015	1154	1	0	0	1	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	t0016	1154	1	0	0	1	0	0	copy fasta	CST9	chr20	23597410	23610917
CSTA_chr3_122320248_122346969	1/1	t0001	448	372	86	64	160	14	46	copy fasta	CSTA	chr3	122320248	122346969
CSTA_chr3_122320248_122346969	0/0	t0002	448	4	4	0	0	0	0	copy fasta	CSTA	chr3	122320248	122346969
CSTA_chr3_122320248_122346969	0/0	t0003	448	1	0	0	1	0	0	copy fasta	CSTA	chr3	122320248	122346969
CSTA_chr3_122320248_122346969	0/0	t0004	448	1	0	0	1	0	0	copy fasta	CSTA	chr3	122320248	122346969
CSTB_chr21_43768950_43781308	1/1	t0001	292	438	90	82	204	14	46	copy fasta	CSTB	chr21	43768950	43781308
CSTB_chr21_43768950_43781308	0/0	t0002	292	6	6	0	0	0	0	copy fasta	CSTB	chr21	43768950	43781308
CSTB_chr21_43768950_43781308	0/0	t0003	292	4	0	2	0	2	0	copy fasta	CSTB	chr21	43768950	43781308
CSTB_chr21_43768950_43781308	0/0	t0004	292	2	2	0	0	0	0	copy fasta	CSTB	chr21	43768950	43781308
CSTB_chr21_43768950_43781308	0/0	t0005	292	1	1	0	0	0	0	copy fasta	CSTB	chr21	43768950	43781308
CSTB_chr21_43768950_43781308	0/0	t0006	292	1	1	0	0	0	0	copy fasta	CSTB	chr21	43768950	43781308
CSTF1_chr20_56387645_56411362	0/1	t0001	2736	160	5	29	95	6	24	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	1/0	t0002	2737	30	3	8	9	1	8	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0003	2754	24	0	2	22	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0004	2753	19	0	2	16	0	1	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0005	2734	13	11	2	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0006	2736	12	0	2	10	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0007	2755	10	0	4	5	0	1	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0008	2755	10	3	5	0	2	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0009	2758	7	7	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0010	2757	5	5	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0011	2759	5	4	1	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0012	2763	5	0	3	0	0	2	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0013	2736	4	3	1	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362