JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSTF1_chr20_56387645_56411362	0/0	t0014	2762	4	1	1	0	1	1	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0015	2752	4	0	0	4	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0016	2756	4	3	1	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0017	2754	3	2	1	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0018	2741	3	1	1	0	0	1	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0019	2745	3	2	1	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0020	2759	3	3	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0021	2736	3	0	2	0	1	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0022	2735	3	3	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0023	2745	3	3	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0024	2734	3	3	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0025	2741	2	0	1	0	1	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0026	2746	2	2	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0027	2748	2	2	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0028	2756	2	2	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0029	2760	2	1	1	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0030	2735	2	0	0	2	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0031	2735	2	0	0	2	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0032	2735	2	2	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0033	2756	2	0	2	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0034	2760	2	0	0	2	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0035	2764	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0036	2736	1	0	0	0	0	1	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0037	2736	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0038	2725	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0039	2736	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0040	2747	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0041	2755	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0042	2752	1	0	1	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0043	2736	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0044	2735	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0045	2758	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0046	2760	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0047	2760	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0048	2761	1	0	0	0	0	1	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0049	2769	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0050	2759	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0051	2735	1	0	0	0	0	1	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0052	2734	1	0	0	0	1	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0053	2736	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0054	2736	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0055	2736	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0056	2736	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0057	2736	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0058	2736	1	0	0	0	1	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0059	2736	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0060	2735	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0061	2736	1	0	0	0	0	1	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0062	2736	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0063	2754	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362