JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSTF1_chr20_56387645_56411362	0/0	t0064	2754	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0065	2760	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0066	2735	1	0	1	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0067	2736	1	0	0	0	0	1	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0068	2736	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0069	2741	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0070	2762	1	0	0	0	0	1	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0071	2735	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0072	2735	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0073	2735	1	0	1	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0074	2736	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0075	2736	1	0	0	0	0	1	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0076	2745	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0077	2751	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0078	2751	1	0	1	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0079	2752	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0080	2754	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0081	2753	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0082	2761	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0083	2757	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0084	2759	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0085	2756	1	0	1	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0086	2735	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0087	2735	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0088	2758	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0089	2735	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0090	2736	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0091	2736	1	0	0	1	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0092	2734	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0093	2736	1	0	1	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0094	2743	1	0	1	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0095	2756	1	0	0	0	0	1	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	t0096	2757	1	0	1	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF2T_chr10_51690486_51704595	1/1	t0001	2260	186	19	40	89	10	26	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0002	2260	88	37	21	27	0	3	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0003	2264	72	7	7	48	2	8	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0004	2264	42	12	7	20	1	2	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0005	2264	6	6	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0006	2264	5	4	1	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0007	2264	3	3	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0008	2237	2	2	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0009	2264	2	0	0	2	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0010	2260	2	0	2	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0011	2260	1	0	1	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0012	2260	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0013	2264	1	1	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0014	2264	1	1	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0015	2264	1	1	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0016	2264	1	1	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0017	2276	1	1	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595