JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSTF2T_chr10_51690486_51704595	0/0	t0018	2265	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0019	2260	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0020	2260	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0021	2260	1	0	0	0	0	1	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0022	2260	1	0	0	0	1	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0023	2260	1	0	0	0	0	1	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0024	2260	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0025	2260	1	1	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0026	2265	1	0	0	0	0	1	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0027	2260	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0028	2264	1	1	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0029	2264	1	0	1	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	t0030	2265	1	1	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2_chrX_100815391_100846520	1/1	t0001	837	258	54	45	114	11	32	copy fasta	CSTF2	chrX	100815391	100846520
CSTF2_chrX_100815391_100846520	0/0	t0002	837	20	2	3	13	0	2	copy fasta	CSTF2	chrX	100815391	100846520
CSTF2_chrX_100815391_100846520	0/0	t0003	837	17	17	0	0	0	0	copy fasta	CSTF2	chrX	100815391	100846520
CSTF2_chrX_100815391_100846520	0/0	t0004	837	1	0	0	1	0	0	copy fasta	CSTF2	chrX	100815391	100846520
CSTF2_chrX_100815391_100846520	0/0	t0005	837	1	1	0	0	0	0	copy fasta	CSTF2	chrX	100815391	100846520
CSTF2_chrX_100815391_100846520	0/0	t0006	837	1	0	0	1	0	0	copy fasta	CSTF2	chrX	100815391	100846520
CSTF2_chrX_100815391_100846520	0/0	t0007	838	1	0	0	1	0	0	copy fasta	CSTF2	chrX	100815391	100846520
CSTF3_chr11_33079584_33166480	1/0	t0001	659	149	68	16	49	6	9	copy fasta	CSTF3	chr11	33079584	33166480
CSTF3_chr11_33079584_33166480	0/0	t0002	659	111	10	22	64	2	13	copy fasta	CSTF3	chr11	33079584	33166480
CSTF3_chr11_33079584_33166480	0/1	t0003	659	91	12	17	50	6	5	copy fasta	CSTF3	chr11	33079584	33166480
CSTF3_chr11_33079584_33166480	0/0	t0004	659	6	0	0	6	0	0	copy fasta	CSTF3	chr11	33079584	33166480
CSTF3_chr11_33079584_33166480	0/0	t0005	659	1	0	0	1	0	0	copy fasta	CSTF3	chr11	33079584	33166480
CSTF3_chr11_33079584_33166480	0/0	t0006	659	1	0	0	0	0	1	copy fasta	CSTF3	chr11	33079584	33166480
CSTF3_chr11_33079584_33166480	0/0	t0007	659	1	0	1	0	0	0	copy fasta	CSTF3	chr11	33079584	33166480
CSTL1_chr20_23434685_23449930	1/1	t0001	299	446	96	71	224	15	38	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	t0002	299	2	0	2	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	t0003	299	2	0	2	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	t0004	299	1	0	0	0	1	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	t0005	299	1	0	1	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTPP1_chr11_46931761_47167247	1/1	t0001	655	208	63	48	66	4	25	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	t0002	655	10	8	2	0	0	0	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	t0003	655	5	0	4	0	0	1	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	t0004	655	1	1	0	0	0	0	copy fasta	CSTPP1	chr11	46931761	47167247
CS_chr12_56266699_56305330	1/1	t0001	1515	277	68	62	106	12	27	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	t0002	1514	18	0	4	12	2	0	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	t0003	1515	6	4	2	0	0	0	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	t0004	1515	4	0	0	4	0	0	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	t0005	1515	3	3	0	0	0	0	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	t0006	1515	1	1	0	0	0	0	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	t0007	1515	1	1	0	0	0	0	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	t0008	1515	1	1	0	0	0	0	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	t0009	1515	1	1	0	0	0	0	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	t0010	1515	1	1	0	0	0	0	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	t0011	1515	1	0	0	0	0	1	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	t0012	1515	1	0	1	0	0	0	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	t0013	1515	1	0	1	0	0	0	copy fasta	CS	chr12	56266699	56305330
CT45A10_chrX_135876065_135898444	1/1	t0001	300	253	66	34	112	9	30	copy fasta	CT45A10	chrX	135876065	135898444