Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADGRL2_chr1_81795934_81998932	0/0	t0101	3038	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0102	3031	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0103	3033	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0104	3036	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0105	3023	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0106	3047	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0107	3042	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0108	3044	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0109	3036	1	0	0	0	1	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0110	3038	1	0	0	1	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0111	3033	1	0	0	1	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0112	3035	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0113	3037	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0114	3033	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0115	3034	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0116	3036	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0117	3036	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0118	3039	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0119	3036	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0120	3036	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0121	3031	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0122	3036	1	0	0	0	0	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0123	3025	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0124	3012	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0125	3022	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0126	3024	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0127	3025	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0128	3012	1	0	0	1	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0129	3022	1	0	0	0	0	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0130	3023	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0131	3023	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0132	3023	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0133	3023	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0134	3010	1	0	0	0	1	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0135	3023	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0136	3011	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0137	3009	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0138	3003	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0139	3008	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0140	3038	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0141	3029	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0142	3037	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0143	3038	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0144	3027	1	0	0	0	1	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0145	3025	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0146	3009	1	0	0	1	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0147	3010	1	0	0	1	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0148	3007	1	0	0	1	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0149	3009	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0150	3009	1	0	0	1	0	0	copy fasta	ADGRL2	chr1	81795934	81998932