JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CT45A10_chrX_135876065_135898444	0/0	t0002	300	4	1	3	0	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	t0003	300	1	1	0	0	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A1_chrX_135708639_135728228	1/0	t0001	254	37	2	8	24	1	1	copy fasta	CT45A1	chrX	135708639	135728228
CT45A1_chrX_135708639_135728228	0/0	t0002	254	19	9	1	8	0	1	copy fasta	CT45A1	chrX	135708639	135728228
CT45A1_chrX_135708639_135728228	0/0	t0003	254	1	0	0	1	0	0	copy fasta	CT45A1	chrX	135708639	135728228
CT45A2_chrX_135806668_135825012	0/0	t0001	752	18	3	7	8	0	0	copy fasta	CT45A2	chrX	135806668	135825012
CT45A2_chrX_135806668_135825012	0/0	t0002	752	3	1	1	1	0	0	copy fasta	CT45A2	chrX	135806668	135825012
CT45A2_chrX_135806668_135825012	0/0	t0003	752	1	0	0	1	0	0	copy fasta	CT45A2	chrX	135806668	135825012
CT45A3_chrX_135755044_135773191	1/0	t0001	399	155	40	35	61	4	14	copy fasta	CT45A3	chrX	135755044	135773191
CT45A3_chrX_135755044_135773191	0/0	t0002	399	1	0	1	0	0	0	copy fasta	CT45A3	chrX	135755044	135773191
CT45A3_chrX_135755044_135773191	0/0	t0003	399	1	0	0	1	0	0	copy fasta	CT45A3	chrX	135755044	135773191
CT45A3_chrX_135755044_135773191	0/0	t0004	399	1	0	0	1	0	0	copy fasta	CT45A3	chrX	135755044	135773191
CT45A3_chrX_135755044_135773191	0/0	t0005	400	1	0	0	1	0	0	copy fasta	CT45A3	chrX	135755044	135773191
CT45A3_chrX_135755044_135773191	0/0	t0006	402	1	0	0	1	0	0	copy fasta	CT45A3	chrX	135755044	135773191
CT45A5_chrX_135770852_135790503	0/0	t0001	2054	46	7	7	19	3	10	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0002	2056	38	0	7	26	0	5	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0003	2052	37	23	8	3	1	2	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0004	2058	15	0	2	12	0	1	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0005	2060	6	4	0	2	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0006	2062	4	4	0	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0007	2052	3	0	3	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0008	2048	3	3	0	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0009	2052	2	2	0	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0010	2052	2	1	1	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0011	2056	2	0	0	2	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0012	2057	1	0	0	1	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0013	2055	1	0	0	1	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0014	2055	1	1	0	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0015	2047	1	1	0	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0016	2057	1	0	0	0	0	1	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0017	2053	1	0	1	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0018	2058	1	1	0	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0019	2054	1	0	0	1	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0020	2054	1	0	1	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0021	2056	1	0	0	0	0	1	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0022	2048	1	0	0	0	0	1	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0023	2052	1	0	0	1	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0024	2059	1	0	0	0	0	1	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0025	2054	1	0	0	0	1	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0026	2054	1	0	0	1	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0027	2053	1	0	1	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0028	2056	1	0	0	1	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0029	2054	1	0	0	1	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	t0030	2056	1	0	1	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A6_chrX_135789685_135807787	0/0	t0001	497	33	10	6	9	2	6	copy fasta	CT45A6	chrX	135789685	135807787
CT45A6_chrX_135789685_135807787	0/0	t0002	497	1	0	0	0	1	0	copy fasta	CT45A6	chrX	135789685	135807787
CT45A6_chrX_135789685_135807787	0/0	t0003	498	1	0	0	0	0	1	copy fasta	CT45A6	chrX	135789685	135807787
CT45A6_chrX_135789685_135807787	0/0	t0004	497	1	1	0	0	0	0	copy fasta	CT45A6	chrX	135789685	135807787
CT45A7_chrX_135824229_135842280	0/0	t0001	457	10	1	2	7	0	0	copy fasta	CT45A7	chrX	135824229	135842280
CT45A7_chrX_135824229_135842280	0/0	t0002	457	6	0	2	3	1	0	copy fasta	CT45A7	chrX	135824229	135842280