JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTAGE1_chr18_22408599_22422915	0/0	t0002	2080	104	13	21	62	3	5	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0003	2080	68	0	4	53	6	5	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0004	2080	23	0	2	18	0	3	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0005	2080	14	14	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0006	2081	8	8	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0007	2080	8	1	5	0	1	1	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0008	2080	8	7	1	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0009	2080	7	7	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0010	2080	5	0	1	1	0	3	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0011	2080	4	0	2	0	0	2	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0012	2080	3	3	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0013	2080	3	0	0	3	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0014	2080	2	2	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0015	2080	2	0	0	0	0	2	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0016	2080	2	2	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0017	2080	2	2	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0018	2080	2	0	0	2	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0019	2080	2	2	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0020	2080	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0021	2080	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0022	2080	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0023	2080	1	0	1	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0024	2080	1	0	0	0	1	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0025	2080	1	0	0	0	0	1	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0026	2080	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0027	2080	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0028	2080	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0029	2080	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0030	2080	1	0	0	0	0	1	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0031	2080	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0032	2080	1	0	0	0	0	1	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0033	2081	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0034	2080	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0035	2080	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0036	2080	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0037	2080	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0038	2080	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0039	2080	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0040	2080	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	t0041	2080	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE4_chr7_144178466_144191080	0/0	t0001	282	257	15	42	165	5	30	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	t0002	282	124	42	27	34	5	16	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	t0003	282	8	7	1	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	t0004	282	1	1	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	t0005	282	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	t0006	282	1	1	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE6_chr7_143750089_143762696	0/0	t0001	275	168	28	28	90	6	16	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	t0002	275	8	0	2	6	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	t0003	283	8	0	0	8	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	t0004	275	2	2	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696