JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTAGE6_chr7_143750089_143762696	0/0	t0005	275	2	1	1	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	t0006	275	1	0	1	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	t0007	275	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE8_chr7_144261674_144274288	0/0	t0001	282	91	15	10	55	3	8	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	t0002	282	57	20	4	27	3	3	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	t0003	275	2	0	0	0	2	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	t0004	282	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	t0005	282	1	0	0	0	0	1	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE9_chr6_131703441_131716017	1/1	t0001	244	259	53	52	113	11	28	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	t0002	244	116	29	8	66	3	10	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	t0003	244	15	7	1	7	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	t0004	244	10	9	1	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	t0005	244	4	0	4	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	t0006	244	3	1	0	0	2	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	t0007	244	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTBP1_chr4_1206445_1254130	0/0	t0001	1199	200	40	33	94	5	28	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	1/1	t0002	1199	174	36	34	79	7	16	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0003	1200	7	2	1	4	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0004	1199	6	1	4	0	1	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0005	1199	6	0	0	6	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0006	1199	5	5	0	0	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0007	1199	4	0	3	1	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0008	1200	3	1	0	2	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0009	1199	3	3	0	0	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0010	1199	2	0	0	0	0	2	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0011	1199	1	0	0	1	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0012	1199	1	0	1	0	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0013	1199	1	1	0	0	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0014	1199	1	0	0	1	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0015	1199	1	1	0	0	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0016	1199	1	1	0	0	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0017	1199	1	0	0	1	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0018	1199	1	0	0	1	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0019	1199	1	1	0	0	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0020	1199	1	1	0	0	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0021	1199	1	1	0	0	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	t0022	1199	1	0	0	0	1	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP2_chr10_124979317_125033071	0/0	t0001	5505	49	4	9	24	2	10	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0002	5497	39	11	7	19	0	2	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0003	5507	22	1	1	17	0	3	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0004	5507	13	1	1	9	0	2	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	1/0	t0005	5514	12	5	4	2	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0006	5516	10	3	7	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0007	5505	10	3	0	4	3	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0008	5509	8	0	1	6	0	1	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0009	5513	8	0	0	7	0	1	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0010	5498	8	1	1	2	0	4	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0011	5515	6	6	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0012	5498	6	0	6	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0013	5491	6	0	0	6	0	0	copy fasta	CTBP2	chr10	124979317	125033071