JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTBP2_chr10_124979317_125033071	0/0	t0014	5516	6	3	3	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0015	5498	5	0	0	5	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0016	5498	5	0	0	5	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0017	5500	5	0	4	0	0	1	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0018	5502	5	0	4	0	0	1	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/1	t0019	5497	4	2	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0020	5505	4	0	0	4	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0021	5518	4	4	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0022	5510	4	0	2	0	2	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0023	5481	3	0	2	0	1	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0024	5511	3	1	0	2	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0025	5517	3	0	0	3	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0026	5507	3	3	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0027	5489	3	0	0	3	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0028	5496	3	3	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0029	5512	3	3	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0030	5514	3	3	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0031	5508	3	2	1	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0032	5499	3	3	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0033	5510	3	0	2	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0034	5498	2	0	1	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0035	5503	2	0	0	2	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0036	5511	2	0	0	2	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0037	5480	2	0	1	0	0	1	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0038	5508	2	0	0	2	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0039	5501	2	0	2	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0040	5503	2	0	1	0	0	1	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0041	5509	2	0	0	2	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0042	5519	2	0	0	2	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0043	5502	2	0	0	0	0	2	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0044	5515	2	0	0	2	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0045	5519	2	2	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0046	5515	2	0	0	2	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0047	5501	2	0	0	2	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0048	5510	2	2	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0049	5508	2	0	2	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0050	5512	2	0	1	0	0	1	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0051	5516	2	0	1	0	0	1	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0052	5520	2	0	2	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0053	5511	2	2	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0054	5505	1	0	0	0	0	1	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0055	5506	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0056	5512	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0057	5520	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0058	5514	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0059	5525	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0060	5495	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0061	5501	1	0	1	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0062	5505	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0063	5509	1	0	0	0	1	0	copy fasta	CTBP2	chr10	124979317	125033071