JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTBP2_chr10_124979317_125033071	0/0	t0114	5497	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0115	5502	1	0	1	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0116	5526	1	0	1	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0117	5514	1	0	0	0	1	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0118	5524	1	0	1	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0119	5500	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0120	5504	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	t0121	5518	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBS_chr1_84544611_84579440	1/1	t0001	5414	150	16	33	78	7	14	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0002	5415	44	17	13	8	1	5	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0003	5412	32	0	0	29	0	3	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0004	5415	26	7	6	11	1	1	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0005	5415	18	18	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0006	5416	17	8	6	0	1	2	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0007	5416	9	8	0	0	0	1	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0008	5414	6	0	2	1	2	1	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0009	5415	5	0	0	0	0	5	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0010	5407	5	5	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0011	5416	3	2	1	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0012	5414	3	0	0	3	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0013	5412	3	0	0	3	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0014	5415	2	0	0	2	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0015	5415	1	1	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0016	5415	1	0	0	1	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0017	5414	1	0	0	1	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0018	5414	1	0	1	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0019	5414	1	1	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0020	5412	1	0	0	1	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0021	5414	1	1	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0022	5414	1	1	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0023	5414	1	0	0	0	0	1	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0024	5415	1	0	0	0	0	1	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0025	5414	1	0	0	1	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0026	5414	1	0	0	1	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0027	5412	1	0	0	1	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0028	5414	1	0	0	1	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0029	5415	1	1	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0030	5407	1	1	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	t0031	5415	1	1	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTC1_chr17_8219815_8253056	1/0	t0001	3386	108	22	11	66	1	7	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0002	3386	97	4	23	62	1	7	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/1	t0003	3386	83	19	16	28	6	13	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0004	3386	25	15	4	0	1	5	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0005	3386	16	0	4	6	0	6	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0006	3386	7	0	0	7	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0007	3386	5	5	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0008	3386	4	0	3	0	1	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0009	3386	4	4	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0010	3386	4	4	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0011	3386	3	0	0	3	0	0	copy fasta	CTC1	chr17	8219815	8253056