JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTC1_chr17_8219815_8253056	0/0	t0012	3385	3	3	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0013	3386	3	3	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0014	3386	3	0	3	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0015	3386	2	0	1	0	1	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0016	3386	2	0	1	0	1	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0017	3386	2	0	0	2	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0018	3449	2	2	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0019	3386	2	0	0	2	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0020	3386	2	2	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0021	3386	1	0	1	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0022	3386	1	0	0	1	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0023	3386	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0024	3386	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0025	3386	1	0	1	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0026	3386	1	0	0	0	0	1	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0027	3386	1	0	0	1	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0028	3386	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0029	3386	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0030	3386	1	0	0	1	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0031	3386	1	0	0	1	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0032	3386	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0033	3386	1	0	1	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0034	3386	1	0	0	1	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0035	3386	1	0	1	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0036	3386	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0037	3386	1	0	0	1	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0038	3386	1	0	1	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0039	3386	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0040	3386	1	0	0	1	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0041	3386	1	0	0	1	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0042	3386	1	0	1	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0043	3386	1	0	0	0	0	1	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0044	3386	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	t0045	3386	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTCFL_chr20_57492166_57530140	1/1	t0001	1509	295	53	51	147	13	29	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0002	1509	77	7	10	38	3	19	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0003	1510	10	9	1	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0004	1509	9	8	1	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0005	1510	8	7	1	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0006	1509	6	6	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0007	1509	4	0	1	0	1	2	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0008	1509	3	0	0	3	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0009	1509	3	3	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0010	1509	2	2	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0011	1509	2	0	2	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0012	1510	1	1	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0013	1509	1	0	0	1	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0014	1509	1	0	0	1	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0015	1509	1	0	0	0	1	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	t0016	1509	1	0	1	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140