JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTCF_chr16_67557526_67644177	1/1	t0001	1631	120	51	28	19	7	13	copy fasta	CTCF	chr16	67557526	67644177
CTCF_chr16_67557526_67644177	0/0	t0002	1631	17	9	4	3	0	1	copy fasta	CTCF	chr16	67557526	67644177
CTCF_chr16_67557526_67644177	0/0	t0003	1631	8	4	0	0	0	4	copy fasta	CTCF	chr16	67557526	67644177
CTCF_chr16_67557526_67644177	0/0	t0004	1630	8	8	0	0	0	0	copy fasta	CTCF	chr16	67557526	67644177
CTCF_chr16_67557526_67644177	0/0	t0005	1631	4	0	3	0	1	0	copy fasta	CTCF	chr16	67557526	67644177
CTCF_chr16_67557526_67644177	0/0	t0006	1629	2	2	0	0	0	0	copy fasta	CTCF	chr16	67557526	67644177
CTCF_chr16_67557526_67644177	0/0	t0007	1631	2	2	0	0	0	0	copy fasta	CTCF	chr16	67557526	67644177
CTCF_chr16_67557526_67644177	0/0	t0008	1631	2	0	0	2	0	0	copy fasta	CTCF	chr16	67557526	67644177
CTCF_chr16_67557526_67644177	0/0	t0009	1631	1	1	0	0	0	0	copy fasta	CTCF	chr16	67557526	67644177
CTCF_chr16_67557526_67644177	0/0	t0010	1631	1	0	0	1	0	0	copy fasta	CTCF	chr16	67557526	67644177
CTCF_chr16_67557526_67644177	0/0	t0011	1631	1	1	0	0	0	0	copy fasta	CTCF	chr16	67557526	67644177
CTCF_chr16_67557526_67644177	0/0	t0012	1631	1	0	0	1	0	0	copy fasta	CTCF	chr16	67557526	67644177
CTCF_chr16_67557526_67644177	0/0	t0013	1631	1	0	1	0	0	0	copy fasta	CTCF	chr16	67557526	67644177
CTDNEP1_chr17_7238591_7256734	1/0	t0001	1033	259	71	37	111	13	26	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDNEP1_chr17_7238591_7256734	0/1	t0002	1034	106	12	29	54	5	5	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDNEP1_chr17_7238591_7256734	0/0	t0003	1034	14	2	4	6	0	2	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDNEP1_chr17_7238591_7256734	0/0	t0004	1035	6	2	2	2	0	0	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDNEP1_chr17_7238591_7256734	0/0	t0005	1033	6	6	0	0	0	0	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDNEP1_chr17_7238591_7256734	0/0	t0006	1034	1	1	0	0	0	0	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDNEP1_chr17_7238591_7256734	0/0	t0007	1035	1	0	0	0	0	1	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDNEP1_chr17_7238591_7256734	0/0	t0008	1033	1	0	0	1	0	0	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDNEP1_chr17_7238591_7256734	0/0	t0009	1033	1	0	0	1	0	0	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDNEP1_chr17_7238591_7256734	0/0	t0010	1033	1	1	0	0	0	0	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDNEP1_chr17_7238591_7256734	0/0	t0011	1034	1	0	0	1	0	0	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDNEP1_chr17_7238591_7256734	0/0	t0012	1033	1	1	0	0	0	0	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDP1_chr18_79674803_79759503	1/0	t0001	859	206	60	30	90	6	19	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/1	t0002	859	110	2	26	61	5	15	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0003	859	33	3	10	12	3	5	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0004	859	6	0	0	6	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0005	859	5	5	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0006	859	3	3	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0007	859	3	2	1	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0008	859	3	2	1	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0009	859	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0010	859	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0011	859	1	0	0	0	0	1	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0012	859	1	0	0	0	0	1	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0013	859	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0014	859	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0015	859	1	0	0	0	0	1	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0016	859	1	0	1	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	t0017	859	1	0	1	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDSP1_chr2_218394868_218410941	1/1	t0001	1740	270	63	58	118	8	21	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0002	1740	106	3	19	54	8	22	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0003	1740	18	15	0	0	0	3	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0004	1740	3	3	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0005	1740	3	1	2	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0006	1740	2	0	0	0	0	2	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0007	1740	2	2	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0008	1740	2	0	0	2	0	0	copy fasta	CTDSP1	chr2	218394868	218410941