JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTDSP1_chr2_218394868_218410941	0/0	t0009	1740	2	2	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0010	1740	2	2	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0011	1740	1	0	0	1	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0012	1740	1	0	0	1	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0013	1740	1	1	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0014	1740	1	0	1	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0015	1740	1	0	0	1	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0016	1740	1	1	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0017	1740	1	1	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0018	1740	1	0	0	1	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0019	1740	1	1	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0020	1740	1	0	0	1	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0021	1740	1	1	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0022	1740	1	1	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0023	1740	1	1	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	t0024	1740	1	0	0	1	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP2_chr12_57814927_57851729	0/1	t0001	3970	286	49	71	118	12	35	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0002	3970	15	15	0	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0003	3970	8	0	0	6	0	2	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0004	3970	6	6	0	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	1/0	t0005	3970	6	4	1	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0006	3970	2	2	0	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0007	3968	2	0	0	0	0	2	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0008	3970	1	0	0	0	0	1	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0009	3970	1	0	0	1	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0010	3970	1	1	0	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0011	3970	1	0	0	1	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0012	3970	1	0	0	0	0	1	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0013	3970	1	1	0	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0014	3970	1	0	0	1	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0015	3970	1	1	0	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0016	3970	1	1	0	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0017	3970	1	0	0	1	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0018	3970	1	1	0	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0019	3970	1	0	0	0	0	1	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0020	3970	1	0	0	1	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0021	3970	1	0	0	1	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0022	3968	1	0	0	1	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0023	3970	1	0	0	1	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0024	3970	1	1	0	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0025	3970	1	1	0	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0026	3970	1	1	0	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0027	3970	1	1	0	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	t0028	3970	1	1	0	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSPL2_chr15_44422629_44534038	1/1	t0001	5033	90	37	17	22	1	11	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0002	5033	29	3	11	8	1	6	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0003	5031	20	6	1	11	0	2	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0004	5033	19	0	1	17	0	1	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0005	5033	18	6	0	12	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0006	5033	8	0	3	5	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038