JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTDSPL2_chr15_44422629_44534038	0/0	t0007	5030	8	0	2	6	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0008	5032	6	6	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0009	5032	4	4	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0010	5032	4	4	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0011	5032	4	4	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0012	5029	2	2	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0013	5033	2	2	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0014	5032	2	0	0	2	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0015	5033	2	0	0	2	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0016	5032	2	0	2	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0017	5034	1	1	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0018	5029	1	1	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0019	5033	1	0	0	1	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0020	5033	1	0	0	0	0	1	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0021	5033	1	0	1	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0022	5033	1	1	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0023	5033	1	0	0	0	0	1	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0024	5031	1	0	0	1	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0025	5031	1	1	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0026	5031	1	1	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0027	5033	1	1	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0028	5033	1	0	0	1	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0029	5033	1	0	0	1	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	t0030	5031	1	0	0	1	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL_chr3_37856880_37989469	1/1	t0001	3923	77	25	18	17	6	9	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0002	3922	17	2	6	6	0	3	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0003	3916	8	7	1	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0004	3917	8	6	2	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0005	3915	7	5	0	0	0	2	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0006	3929	5	5	0	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0007	3923	4	3	1	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0008	3929	4	2	1	1	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0009	3923	3	0	0	2	0	1	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0010	3923	3	3	0	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0011	3923	3	3	0	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0012	3924	2	1	1	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0013	3929	2	2	0	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0014	3923	2	0	0	0	2	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0015	3904	2	0	0	0	0	2	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0016	3911	2	2	0	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0017	3925	2	2	0	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0018	3923	1	0	1	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0019	3922	1	0	1	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0020	3930	1	1	0	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0021	3923	1	0	1	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0022	3918	1	1	0	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0023	3923	1	1	0	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0024	3923	1	0	0	1	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0025	3923	1	0	0	1	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0026	3929	1	1	0	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469