JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTDSPL_chr3_37856880_37989469	0/0	t0027	3935	1	1	0	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0028	3923	1	0	0	1	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0029	3923	1	0	0	1	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0030	3910	1	0	0	0	0	1	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0031	3917	1	1	0	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	t0032	3923	1	0	1	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTF1_chr16_30891614_30908547	0/1	t0001	1039	149	14	42	70	11	11	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	t0002	1039	89	25	15	23	4	22	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	t0003	1039	27	26	1	0	0	0	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	t0004	1039	12	12	0	0	0	0	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	1/0	t0005	1039	9	8	0	0	0	0	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	t0006	1039	9	0	9	0	0	0	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	t0007	1039	3	3	0	0	0	0	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	t0008	1039	3	0	2	0	1	0	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	t0009	1039	2	2	0	0	0	0	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	t0010	1039	1	0	0	1	0	0	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	t0011	1039	1	0	0	0	0	1	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	t0012	1039	1	1	0	0	0	0	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	t0013	1039	1	1	0	0	0	0	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	t0014	1066	1	0	1	0	0	0	copy fasta	CTF1	chr16	30891614	30908547
CTHRC1_chr8_103366538_103387989	1/1	t0001	509	395	90	67	179	16	41	copy fasta	CTHRC1	chr8	103366538	103387989
CTHRC1_chr8_103366538_103387989	0/0	t0002	509	8	0	3	5	0	0	copy fasta	CTHRC1	chr8	103366538	103387989
CTHRC1_chr8_103366538_103387989	0/0	t0003	509	2	2	0	0	0	0	copy fasta	CTHRC1	chr8	103366538	103387989
CTHRC1_chr8_103366538_103387989	0/0	t0004	120	1	0	0	0	0	1	copy fasta	CTHRC1	chr8	103366538	103387989
CTHRC1_chr8_103366538_103387989	0/0	t0005	509	1	0	0	1	0	0	copy fasta	CTHRC1	chr8	103366538	103387989
CTHRC1_chr8_103366538_103387989	0/0	t0006	509	1	0	0	1	0	0	copy fasta	CTHRC1	chr8	103366538	103387989
CTH_chr1_70406268_70444851	1/0	t0001	873	237	50	31	128	6	21	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/1	t0002	873	83	2	29	40	6	5	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	t0003	873	64	22	8	23	6	5	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	t0004	873	21	4	5	11	0	1	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	t0005	873	9	8	1	0	0	0	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	t0006	873	4	4	0	0	0	0	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	t0007	873	2	2	0	0	0	0	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	t0008	873	1	1	0	0	0	0	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	t0009	873	1	0	0	0	0	1	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	t0010	873	1	0	0	0	0	1	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	t0011	873	1	1	0	0	0	0	copy fasta	CTH	chr1	70406268	70444851
CTIF_chr18_48534031_48868217	1/0	t0001	3969	27	3	9	9	0	5	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0002	3974	10	3	5	1	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0003	3966	10	9	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0004	3970	9	8	0	0	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0005	3974	5	1	0	1	0	3	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0006	3970	5	4	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0007	3973	4	2	1	0	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0008	3974	4	4	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0009	3969	3	0	0	2	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0010	3974	3	0	0	3	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0011	3971	3	3	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0012	3973	3	1	1	0	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0013	3977	3	3	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217