JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTIF_chr18_48534031_48868217	0/0	t0014	3969	2	0	0	1	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0015	3978	2	2	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0016	3974	2	2	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/1	t0017	3954	2	0	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0018	3978	2	2	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0019	3974	2	2	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0020	3966	2	2	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0021	3970	2	2	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0022	3977	2	2	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0023	3973	2	2	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0024	3974	2	0	0	2	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0025	3954	2	2	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0026	3977	2	2	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0027	3965	2	1	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0028	3969	1	0	0	0	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0029	3969	1	0	0	1	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0030	3978	1	0	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0031	3974	1	0	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0032	3974	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0033	3974	1	0	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0034	3970	1	0	0	0	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0035	3974	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0036	3967	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0037	3978	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0038	3970	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0039	3958	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0040	3977	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0041	3966	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0042	3970	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0043	3966	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0044	3975	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0045	3973	1	0	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0046	3970	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0047	3970	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0048	3973	1	0	0	0	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0049	3969	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0050	3969	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0051	3977	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0052	3950	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0053	3974	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	t0054	3974	1	0	0	0	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTLA4_chr2_203862771_203878965	0/0	t0001	1284	132	13	25	67	6	21	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0002	1302	71	10	17	37	1	6	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0003	1300	37	4	4	22	1	6	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0004	1306	24	7	4	12	0	1	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0005	1304	22	7	2	12	1	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	1/0	t0006	1326	17	3	2	8	3	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/1	t0007	1322	13	3	3	4	1	1	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0008	1314	11	5	3	2	0	1	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0009	1296	11	11	0	0	0	0	copy fasta	CTLA4	chr2	203862771	203878965