JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTLA4_chr2_203862771_203878965	0/0	t0010	1320	8	3	0	3	1	1	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0011	1300	7	0	0	7	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0012	1324	7	2	0	3	0	2	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0013	1318	7	2	2	1	1	1	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0014	1316	7	5	0	0	0	2	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0015	1302	6	0	0	6	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0016	1330	6	1	1	4	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0017	1298	6	4	1	1	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0018	1328	4	0	2	1	1	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0019	1310	3	2	1	0	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0020	1294	3	2	0	1	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0021	1308	2	2	0	0	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0022	1302	1	0	0	1	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0023	1284	1	0	0	1	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0024	1302	1	1	0	0	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0025	1318	1	0	1	0	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0026	1303	1	0	0	1	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0027	1315	1	0	0	1	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0028	1313	1	1	0	0	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0029	1309	1	0	0	1	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0030	1304	1	0	0	1	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0031	1305	1	0	0	1	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0032	1303	1	0	0	1	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0033	1300	1	0	0	1	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0034	1302	1	1	0	0	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0035	1290	1	1	0	0	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0036	1284	1	0	0	1	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	t0037	1284	1	0	0	1	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTNNA1_chr5_138748425_138940034	1/0	t0001	1034	112	41	20	31	6	13	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/1	t0002	1033	36	4	15	1	4	11	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	t0003	1030	20	15	5	0	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	t0004	1030	4	4	0	0	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	t0005	1033	3	3	0	0	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	t0006	1034	2	2	0	0	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	t0007	1034	2	0	2	0	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	t0008	1030	1	1	0	0	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA2_chr2_79508051_80653780	0/0	t0001	1071	50	40	4	1	0	5	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	t0002	1072	15	5	6	3	0	1	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	t0003	1071	1	1	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	t0004	1071	1	1	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	t0005	1071	1	1	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA3_chr10_65907523_67701195	0/0	t0001	8012	5	3	2	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0002	8015	4	3	0	1	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0003	8009	4	3	0	1	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0004	8015	3	1	0	2	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0005	8014	3	1	1	1	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0006	8014	3	3	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0007	8015	2	2	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0008	8015	2	1	1	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0009	8009	2	2	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195