JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTNNA3_chr10_65907523_67701195	0/0	t0010	8014	2	2	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0011	8009	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0012	8009	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0013	8009	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0014	8012	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0015	8015	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0016	8015	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0017	8015	1	0	0	1	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0018	8012	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0019	8012	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0020	8014	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0021	8014	1	0	1	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0022	8009	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0023	8012	1	0	1	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0024	8015	1	0	0	1	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0025	8015	1	0	0	1	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	t0026	8012	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNAL1_chr9_108937577_109018499	1/1	t0001	250	385	70	67	202	10	34	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	t0002	250	27	18	2	0	2	5	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	t0003	250	5	0	2	0	2	1	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	t0004	250	1	0	1	0	0	0	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	t0005	250	1	1	0	0	0	0	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	t0006	250	1	1	0	0	0	0	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNB1_chr3_41194505_41245443	0/0	t0001	1317	89	12	11	54	2	10	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0002	1322	48	3	13	26	1	5	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	1/1	t0003	1316	28	9	2	13	2	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0004	1315	20	15	4	1	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0005	1311	19	3	5	7	2	2	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0006	1323	14	0	2	9	1	2	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0007	1318	11	0	0	9	0	2	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0008	1321	9	1	4	1	2	1	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0009	1316	9	1	5	2	0	1	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0010	1317	8	6	1	1	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0011	1312	8	8	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0012	1318	7	1	0	5	0	1	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0013	1318	6	5	0	1	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0014	1320	5	0	0	4	0	1	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0015	1314	5	4	1	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0016	1321	4	1	2	1	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0017	1316	4	4	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0018	1319	4	4	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0019	1324	3	0	0	2	0	1	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0020	1314	3	3	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0021	1315	3	3	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0022	1320	2	0	1	0	1	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0023	1324	2	2	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0024	1320	2	0	0	2	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0025	1310	2	1	0	0	1	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0026	1312	2	0	1	1	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0027	1319	2	2	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443