JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTNNB1_chr3_41194505_41245443	0/0	t0028	1317	2	0	0	2	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0029	1323	1	0	0	0	0	1	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0030	1324	1	0	0	1	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0031	1323	1	0	0	1	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0032	1324	1	1	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0033	1325	1	0	0	1	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0034	1322	1	0	0	1	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0035	1315	1	1	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0036	1318	1	0	1	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0037	1316	1	0	0	1	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0038	1317	1	1	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0039	1320	1	1	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0040	1321	1	0	1	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0041	1325	1	1	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0042	1316	1	0	0	1	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0043	1311	1	0	1	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0044	1318	1	1	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0045	1317	1	1	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0046	1317	1	0	1	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0047	1320	1	0	0	0	0	1	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0048	1322	1	0	0	1	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	t0049	1317	1	1	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNBIP1_chr1_9843276_9915269	0/0	t0001	2761	141	15	33	63	8	22	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0002	2761	33	9	0	21	0	3	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/1	t0003	2761	32	7	7	6	2	9	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0004	2761	17	16	1	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	1/0	t0005	2761	16	14	1	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0006	2761	16	0	8	8	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0007	2761	9	8	1	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0008	2761	6	0	0	6	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0009	2761	6	6	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0010	2761	4	0	1	3	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0011	2761	4	4	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0012	2759	3	0	3	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0013	2761	3	3	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0014	2761	2	0	0	0	2	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0015	2761	1	1	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0016	2761	1	0	0	1	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0017	2761	1	0	0	1	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0018	2761	1	0	0	1	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0019	2761	1	0	1	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0020	2761	1	1	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0021	2761	1	1	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0022	2761	1	0	0	1	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0023	2761	1	1	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0024	2761	1	0	0	1	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0025	2761	1	1	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0026	2761	1	0	0	1	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0027	2761	1	1	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0028	2761	1	0	0	1	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269