JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTNNBIP1_chr1_9843276_9915269	0/0	t0029	2761	1	1	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0030	2761	1	1	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0031	2761	1	1	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	t0032	2761	1	1	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBL1_chr20_37689030_37877118	1/1	t0001	199	266	84	54	84	12	30	copy fasta	CTNNBL1	chr20	37689030	37877118
CTNND1_chr11_57756802_57824540	1/1	t0001	3764	112	30	21	43	3	13	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	t0002	3764	78	13	23	24	7	11	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	t0003	3764	55	7	14	19	4	11	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	t0004	3759	19	18	1	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	t0005	3764	7	7	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	t0006	3762	5	1	3	0	0	1	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	t0007	3764	2	2	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	t0008	3764	2	0	0	2	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	t0009	3764	2	0	0	2	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	t0010	3764	2	0	2	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	t0011	3764	1	0	0	1	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	t0012	3764	1	1	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	t0013	3764	1	0	0	1	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	t0014	3764	1	1	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND2_chr5_10966836_11909446	1/1	t0001	2211	24	18	2	2	0	0	copy fasta	CTNND2	chr5	10966836	11909446
CTNND2_chr5_10966836_11909446	0/0	t0002	2211	1	1	0	0	0	0	copy fasta	CTNND2	chr5	10966836	11909446
CTNND2_chr5_10966836_11909446	0/0	t0003	2211	1	1	0	0	0	0	copy fasta	CTNND2	chr5	10966836	11909446
CTNS_chr17_3631760_3668103	0/1	t0001	3036	70	0	15	47	2	5	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0002	3036	44	5	11	20	4	4	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0003	3038	31	0	1	24	3	3	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0004	3035	28	22	4	0	0	2	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0005	3036	27	1	10	7	0	9	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0006	3039	17	0	2	11	0	4	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0007	3036	8	2	4	0	0	2	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0008	3036	7	7	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0009	3038	6	0	5	0	1	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0010	3035	6	5	0	0	1	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0011	3036	5	1	0	0	0	4	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0012	3036	5	0	0	5	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0013	3036	5	0	3	2	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0014	3040	4	0	4	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0015	3036	4	0	0	3	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0016	3036	3	0	0	3	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0017	3038	3	0	1	0	2	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0018	3036	3	3	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0019	3036	3	0	0	2	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0020	3036	3	3	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0021	3035	3	1	0	2	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0022	3041	2	1	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0023	3040	2	0	1	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0024	3039	2	0	2	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0025	3038	2	0	2	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0026	3036	2	2	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0027	3036	2	2	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0028	3036	2	2	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103