JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTNS_chr17_3631760_3668103	0/0	t0029	3035	2	2	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0030	3036	2	0	0	2	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0031	3036	2	0	0	2	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0032	3035	2	0	0	2	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0033	3036	2	0	0	2	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0034	3036	2	0	0	2	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0035	3038	2	0	0	2	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0036	3036	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0037	3036	1	0	1	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0038	3038	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0039	3039	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0040	3040	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0041	3042	1	0	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0042	3041	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0043	3039	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0044	3041	1	0	0	0	1	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0045	3040	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0046	3040	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0047	3040	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0048	3039	1	0	1	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0049	3039	1	0	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0050	3040	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0051	3038	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0052	3037	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0053	3038	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0054	3038	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0055	3036	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0056	3036	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0057	3036	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0058	3036	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0059	3036	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0060	3036	1	0	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0061	3036	1	0	1	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0062	3036	1	0	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0063	3036	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0064	3036	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0065	3037	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0066	3036	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0067	3036	1	0	1	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0068	3037	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0069	3036	1	0	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0070	3036	1	0	1	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0071	3035	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0072	3036	1	0	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0073	3033	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0074	3035	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0075	3036	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	1/0	t0076	3036	1	0	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0077	3036	1	0	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0078	3036	1	0	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103