JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTNS_chr17_3631760_3668103	0/0	t0079	3036	1	0	1	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0080	3036	1	0	1	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0081	3036	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0082	3036	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0083	3036	1	0	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0084	3036	1	0	1	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0085	3036	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0086	3036	1	0	1	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0087	3036	1	0	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0088	3036	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0089	3034	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0090	3036	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0091	3036	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0092	3036	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0093	3036	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	t0094	3036	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTPS1_chr1_40974696_41017565	1/1	t0001	1065	306	74	58	128	13	31	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	t0002	1065	42	0	10	28	2	2	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	t0003	1065	18	0	1	17	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	t0004	1065	9	8	1	0	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	t0005	1065	4	0	0	0	1	3	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	t0006	1065	2	0	0	2	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	t0007	1065	1	0	0	1	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	t0008	1065	1	1	0	0	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	t0009	1065	1	1	0	0	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	t0010	1065	1	1	0	0	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	t0011	1065	1	1	0	0	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	t0012	1065	1	1	0	0	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	t0013	1065	1	1	0	0	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS2_chrX_16582999_16717669	0/0	t0001	2192	123	7	27	68	6	15	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/1	t0002	2194	71	34	13	18	1	4	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	t0003	2194	9	6	3	0	0	0	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	t0004	2192	6	6	0	0	0	0	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	t0005	2194	4	1	3	0	0	0	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	t0006	2192	2	0	0	2	0	0	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	t0007	2194	2	2	0	0	0	0	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	t0008	2194	2	2	0	0	0	0	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	t0009	2192	1	0	0	1	0	0	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	t0010	2192	1	0	0	1	0	0	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	t0011	2194	1	1	0	0	0	0	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	1/0	t0012	2193	1	0	0	0	0	0	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	t0013	2194	1	0	0	1	0	0	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	t0014	2192	1	0	0	0	0	1	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	t0015	2194	1	1	0	0	0	0	copy fasta	CTPS2	chrX	16582999	16717669
CTR9_chr11_10746246_10784746	1/1	t0001	809	321	68	61	139	16	35	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	t0002	809	70	19	5	40	2	4	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	t0003	809	7	7	0	0	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	t0004	809	2	0	1	0	0	1	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	t0005	809	2	2	0	0	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	t0006	809	2	2	0	0	0	0	copy fasta	CTR9	chr11	10746246	10784746