Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADGRL4_chr1_78884764_79011730	0/0	t0003	1467	24	10	5	0	4	5	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	t0004	1467	4	4	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	t0005	1467	4	0	0	4	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	1/0	t0006	1467	3	2	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	t0007	1467	2	2	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	t0008	1467	1	1	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	t0009	1467	1	0	0	1	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	t0010	1467	1	0	0	1	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	t0011	1467	1	1	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	t0012	1467	1	1	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	t0013	1467	1	1	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	t0014	1467	1	0	1	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	t0015	1467	1	1	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	t0016	1467	1	0	1	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	t0017	1467	1	1	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRV1_chr5_90553797_91169437	1/1	t0001	637	121	48	24	30	2	15	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	t0002	637	17	0	2	15	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	t0003	637	12	7	1	1	0	3	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	t0004	637	3	3	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	t0005	637	2	0	0	0	0	2	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	t0006	637	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	t0007	637	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	t0008	637	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADH1A_chr4_99271369_99295985	1/1	t0001	327	330	89	67	126	14	32	copy fasta	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	t0002	327	5	0	0	0	0	5	copy fasta	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	t0003	327	1	0	1	0	0	0	copy fasta	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	t0004	327	1	0	0	0	0	1	copy fasta	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	t0005	327	1	1	0	0	0	0	copy fasta	ADH1A	chr4	99271369	99295985
ADH1B_chr4_99299971_99326401	0/0	t0001	2926	59	0	0	59	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0002	2911	44	0	19	21	1	3	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0003	2934	25	12	1	8	0	4	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0004	2924	19	0	0	7	2	10	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0005	2936	13	1	5	6	0	1	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0006	2935	12	0	5	4	1	2	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0007	2930	12	1	5	0	5	1	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0008	2933	10	4	4	0	0	2	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0009	2930	8	8	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0010	2928	8	0	0	8	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0011	2959	7	7	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0012	2932	7	2	3	2	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0013	2932	6	0	2	0	1	3	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0014	2927	6	4	2	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0015	2928	5	0	0	3	1	1	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0016	2935	4	4	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0017	2931	4	1	2	1	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0018	2961	4	4	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0019	2938	4	0	2	1	1	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0020	2922	4	0	0	0	0	4	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0021	2926	4	0	0	1	0	3	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0022	2913	4	1	1	2	0	0	copy fasta	ADH1B	chr4	99299971	99326401