JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTSB_chr8_11837524_11873087	0/0	t0001	2711	90	1	10	72	1	6	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0002	2711	75	5	20	31	3	16	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0003	2711	50	1	2	45	0	2	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/1	t0004	2712	16	4	7	0	2	2	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0005	2712	13	1	6	0	3	3	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0006	2711	8	8	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0007	2711	8	2	2	1	0	3	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0008	2713	6	6	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0009	2712	5	5	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0010	2712	5	1	1	0	0	3	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0011	2708	5	0	0	5	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	1/0	t0012	2714	5	3	1	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0013	2712	5	1	1	2	0	1	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0014	2710	5	5	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0015	2711	5	0	0	5	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0016	2711	5	0	3	0	1	1	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0017	2713	5	0	4	0	1	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0018	2714	4	4	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0019	2711	4	0	3	0	1	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0020	2712	4	4	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0021	2713	3	3	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0022	2708	3	0	0	0	0	3	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0023	2712	3	3	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0024	2711	3	3	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0025	2713	3	3	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0026	2713	3	0	0	3	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0027	2711	3	1	0	0	0	2	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0028	2713	3	1	0	0	0	2	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0029	2725	3	3	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0030	2712	2	2	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0031	2712	2	2	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0032	2714	2	0	2	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0033	2712	2	2	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0034	2710	2	0	0	2	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0035	2714	2	2	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0036	2710	2	2	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0037	2710	2	2	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0038	2711	2	0	0	0	2	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0039	2713	2	0	0	2	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0040	2714	2	2	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0041	2712	2	0	1	0	0	1	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0042	2711	2	0	0	2	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0043	2710	2	0	0	2	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0044	2710	2	0	0	2	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0045	2712	2	0	2	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0046	2714	2	2	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0047	2713	2	0	1	0	0	1	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0048	2712	2	0	1	0	1	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0049	2714	2	2	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0050	2712	1	0	1	0	0	0	copy fasta	CTSB	chr8	11837524	11873087