JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTSB_chr8_11837524_11873087	0/0	t0051	2711	1	0	1	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0052	2712	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0053	2713	1	0	1	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0054	2711	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0055	2717	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0056	2716	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0057	2713	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0058	2716	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0059	2714	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0060	2711	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0061	2730	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0062	2711	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0063	2711	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0064	2711	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0065	2711	1	0	1	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0066	2710	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0067	2711	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0068	2711	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0069	2711	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0070	2711	1	0	0	0	0	1	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0071	2711	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0072	2711	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0073	2711	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0074	2711	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0075	2711	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0076	2708	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0077	2711	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0078	2711	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0079	2711	1	0	1	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0080	2710	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0081	2714	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0082	2711	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0083	2712	1	0	1	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0084	2711	1	0	1	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0085	2712	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0086	2711	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0087	2709	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0088	2711	1	0	1	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0089	2712	1	0	0	0	0	1	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0090	2712	1	0	1	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0091	2712	1	0	1	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0092	2712	1	0	0	0	1	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0093	2714	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0094	2715	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0095	2711	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0096	2711	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	t0097	2712	1	0	1	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSC_chr11_88288592_88342736	1/1	t0001	479	412	89	67	201	13	40	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	0/0	t0002	479	15	4	7	0	3	1	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	0/0	t0003	479	3	0	2	0	0	1	copy fasta	CTSC	chr11	88288592	88342736