JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTSF_chr11_66558464_66573606	0/0	t0008	590	1	0	1	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	t0009	574	1	0	0	1	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSG_chr14_24568518_24581250	1/1	t0001	147	440	92	70	214	18	44	copy fasta	CTSG	chr14	24568518	24581250
CTSH_chr15_78916058_78950046	1/0	t0001	1138	161	51	14	88	0	7	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0002	1138	76	19	18	17	6	16	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0003	1138	58	4	7	47	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/1	t0004	1138	40	4	10	18	1	6	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0005	1138	34	6	14	9	2	3	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0006	1138	8	0	2	0	0	6	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0007	1138	6	0	1	0	4	1	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0008	1138	6	5	0	1	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0009	1138	4	1	2	0	0	1	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0010	1138	3	3	0	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0011	1138	3	0	0	3	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0012	1138	3	1	1	0	0	1	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0013	1138	2	2	0	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0014	1138	2	0	1	0	0	1	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0015	1138	2	0	1	0	1	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0016	1138	1	0	0	1	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0017	1138	1	1	0	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0018	1138	1	0	0	1	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0019	1138	1	0	0	1	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0020	1138	1	1	0	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	t0021	1138	1	0	1	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSK_chr1_150791208_150813260	1/1	t0001	639	390	91	54	182	15	46	copy fasta	CTSK	chr1	150791208	150813260
CTSK_chr1_150791208_150813260	0/0	t0002	639	1	1	0	0	0	0	copy fasta	CTSK	chr1	150791208	150813260
CTSK_chr1_150791208_150813260	0/0	t0003	639	1	0	0	0	1	0	copy fasta	CTSK	chr1	150791208	150813260
CTSL_chr9_87721119_87736469	1/1	t0001	653	373	77	66	168	18	42	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	t0002	653	7	6	1	0	0	0	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	t0003	653	3	0	3	0	0	0	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	t0004	653	2	0	2	0	0	0	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	t0005	653	1	1	0	0	0	0	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	t0006	653	1	0	0	1	0	0	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	t0007	653	1	0	0	1	0	0	copy fasta	CTSL	chr9	87721119	87736469
CTSO_chr4_155919118_155958866	0/0	t0001	1937	153	13	40	84	4	12	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0002	1937	86	11	17	35	3	20	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0003	1938	38	28	2	3	1	4	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0004	1938	26	16	3	5	0	2	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0005	1937	17	1	3	8	1	4	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0006	1938	7	7	0	0	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0007	1937	3	0	1	0	1	1	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0008	1937	3	3	0	0	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0009	1938	3	0	0	3	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0010	1937	2	0	0	2	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0011	1937	1	0	0	1	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0012	1937	1	0	0	1	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0013	1937	1	0	0	0	0	1	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0014	1937	1	0	1	0	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0015	1937	1	0	1	0	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0016	1937	1	0	0	0	0	1	copy fasta	CTSO	chr4	155919118	155958866