JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTSO_chr4_155919118_155958866	0/0	t0017	1937	1	0	0	1	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0018	1937	1	0	0	0	0	1	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0019	1937	1	1	0	0	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	t0020	1937	1	0	0	1	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSS_chr1_150725188_150770778	0/0	t0001	2940	135	8	29	73	8	17	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/1	t0002	2933	94	7	17	50	5	14	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	1/0	t0003	2940	90	51	3	29	3	3	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	t0004	2937	6	6	0	0	0	0	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	t0005	2931	6	6	0	0	0	0	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	t0006	2940	2	0	0	0	0	2	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	t0007	2933	1	1	0	0	0	0	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	t0008	2940	1	0	0	1	0	0	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	t0009	2933	1	0	1	0	0	0	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	t0010	2933	1	0	0	1	0	0	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	t0011	2940	1	0	0	0	0	1	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	t0012	2940	1	0	0	1	0	0	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	t0013	2940	1	0	0	1	0	0	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	t0014	2940	1	1	0	0	0	0	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	t0015	2931	1	1	0	0	0	0	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	t0016	2940	1	0	0	0	0	1	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	t0017	2940	1	1	0	0	0	0	copy fasta	CTSS	chr1	150725188	150770778
CTSV_chr9_97024677_97044142	1/1	t0001	3355	142	23	42	43	8	24	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0002	3355	127	7	11	97	1	11	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0003	3356	57	20	4	31	1	1	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0004	3355	18	0	0	17	0	1	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0005	3355	15	12	3	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0006	3355	9	9	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0007	3355	5	5	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0008	3355	5	4	1	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0009	3355	4	4	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0010	3355	3	0	0	3	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0011	3355	3	3	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0012	3356	3	0	0	3	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0013	3355	2	2	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0014	3355	2	2	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0015	3355	2	2	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0016	3355	1	0	0	1	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0017	3355	1	0	1	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0018	3355	1	0	0	1	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0019	3355	1	0	0	0	0	1	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0020	3355	1	1	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0021	3355	1	0	0	1	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0022	3355	1	1	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0023	3355	1	0	0	1	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0024	3355	1	0	0	0	0	1	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0025	3355	1	0	0	1	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0026	3355	1	0	0	1	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0027	3355	1	1	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	t0028	3356	1	0	0	0	0	1	copy fasta	CTSV	chr9	97024677	97044142
CTSW_chr11_65874837_65888741	1/1	t0001	142	360	88	68	154	14	34	copy fasta	CTSW	chr11	65874837	65888741