JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTSW_chr11_65874837_65888741	0/0	t0002	142	6	0	0	6	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSZ_chr20_58990185_59012254	0/0	t0001	597	171	5	30	120	5	11	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	t0002	597	70	15	16	23	5	11	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	1/0	t0003	591	64	10	12	28	3	10	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	t0004	591	63	53	6	1	0	3	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/1	t0005	597	41	3	12	13	3	9	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	t0006	597	8	8	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	t0007	597	4	0	0	2	0	2	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	t0008	597	3	1	1	1	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	t0009	598	3	0	0	2	0	1	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	t0010	591	2	2	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	t0011	592	1	0	0	0	0	1	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	t0012	597	1	0	1	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	t0013	591	1	0	0	1	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	t0014	591	1	1	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	t0015	591	1	0	0	0	0	1	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	t0016	597	1	0	0	1	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	t0017	597	1	0	0	0	0	1	copy fasta	CTSZ	chr20	58990185	59012254
CTTNBP2NL_chr1_112391214_112466164	0/0	t0001	3941	102	7	20	66	0	9	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/1	t0002	3940	93	4	20	59	1	8	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	1/0	t0003	3945	33	17	7	0	2	6	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0004	3941	22	22	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0005	3941	14	0	0	14	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0006	3942	9	9	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0007	3941	8	7	1	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0008	3939	5	5	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0009	3941	4	4	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0010	3941	3	0	0	3	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0011	3941	3	3	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0012	3940	3	3	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0013	3941	3	0	2	0	1	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0014	3941	2	2	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0015	3941	2	2	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0016	3941	2	2	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0017	3941	2	1	1	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0018	3945	1	1	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0019	3941	1	1	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0020	3940	1	0	0	1	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0021	3940	1	0	1	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0022	3938	1	0	0	0	0	1	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0023	3940	1	0	1	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0024	3940	1	0	0	1	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0025	3940	1	0	0	0	0	1	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0026	3939	1	1	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0027	3941	1	1	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0028	3941	1	0	1	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0029	3941	1	0	0	0	0	1	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0030	3941	1	0	0	1	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	t0031	3941	1	0	0	1	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2_chr7_117705651_117878441	0/1	t0001	913	126	49	29	30	3	14	copy fasta	CTTNBP2	chr7	117705651	117878441