JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTTNBP2_chr7_117705651_117878441	0/0	t0002	916	25	10	9	2	1	3	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	1/0	t0003	913	7	2	3	0	0	1	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	t0004	911	3	2	1	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	t0005	910	3	3	0	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTN_chr11_70393529_70441575	1/1	t0001	1597	153	19	30	83	6	13	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0002	1598	50	16	13	10	1	10	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0003	1596	15	15	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0004	1597	15	15	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0005	1594	12	3	2	1	2	4	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0006	1594	12	0	1	9	1	1	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0007	1596	11	9	0	2	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0008	1595	9	0	9	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0009	1599	7	2	2	1	1	1	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0010	1598	4	1	0	2	1	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0011	1594	3	0	0	3	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0012	1597	3	3	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0013	1595	2	2	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0014	1596	2	2	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0015	1595	2	2	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0016	1597	2	0	1	0	0	1	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0017	1595	1	1	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0018	1597	1	1	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0019	1597	1	0	0	0	0	1	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0020	1599	1	0	0	0	0	1	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0021	1595	1	1	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0022	1595	1	1	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0023	1597	1	1	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0024	1597	1	0	1	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0025	1597	1	0	0	0	1	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0026	1597	1	1	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0027	1594	1	0	0	0	1	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0028	1595	1	0	0	0	1	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0029	1597	1	0	0	0	1	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0030	1597	1	0	0	1	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0031	1597	1	0	0	1	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0032	1599	1	0	1	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0033	1597	1	0	0	0	0	1	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0034	1596	1	1	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0035	1597	1	0	0	0	0	1	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	t0036	1594	1	0	0	1	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTU1_chr19_51092606_51113409	0/0	t0001	1080	187	15	26	135	3	8	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/1	t0002	1080	45	2	11	17	3	11	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0003	1079	33	6	12	5	4	6	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0004	1080	27	6	13	4	1	3	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0005	1081	21	1	3	16	1	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0006	1081	20	1	2	12	1	4	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0007	1080	15	14	1	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0008	1080	13	4	0	6	1	2	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0009	1081	12	1	4	3	1	3	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0010	1080	8	0	0	8	0	0	copy fasta	CTU1	chr19	51092606	51113409