JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTU1_chr19_51092606_51113409	0/0	t0011	1089	6	6	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0012	1089	5	5	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0013	1080	5	4	1	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0014	1080	5	5	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0015	1078	4	4	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0016	1080	4	0	1	1	0	2	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0017	1081	4	0	1	2	0	1	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0018	1081	3	2	1	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0019	1081	3	1	1	0	0	1	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0020	1080	3	0	0	2	1	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	1/0	t0021	1080	2	0	0	1	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0022	1080	2	2	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0023	1079	2	2	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0024	1080	2	0	0	0	0	2	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0025	1081	2	1	0	1	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0026	1089	2	2	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0027	1080	2	2	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0028	1081	1	1	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0029	1079	1	1	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0030	1078	1	0	0	0	0	1	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0031	1080	1	0	0	1	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0032	1080	1	0	1	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0033	1079	1	1	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0034	1089	1	1	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0035	1080	1	1	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0036	1081	1	0	0	1	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0037	1081	1	0	1	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0038	1081	1	0	0	1	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0039	1081	1	0	0	1	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0040	1089	1	1	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0041	1080	1	1	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0042	1079	1	1	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0043	1080	1	0	0	1	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	t0044	1081	1	0	1	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU2_chr16_88701503_88720396	1/1	t0001	174	357	68	75	159	13	40	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	t0002	174	24	14	4	3	2	1	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	t0003	174	23	11	1	10	0	1	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	t0004	174	11	2	4	2	1	2	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	t0005	178	3	3	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTXN1_chr19_7919491_7931135	1/0	t0001	989	211	55	48	74	7	26	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/1	t0002	989	118	4	19	78	4	12	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	t0003	989	34	13	6	9	1	5	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	t0004	989	21	4	11	1	2	3	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	t0005	989	10	0	0	10	0	0	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	t0006	988	7	0	0	7	0	0	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	t0007	989	5	5	0	0	0	0	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	t0008	992	4	4	0	0	0	0	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	t0009	989	3	3	0	0	0	0	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	t0010	992	2	2	0	0	0	0	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	t0011	989	2	0	0	0	0	2	copy fasta	CTXN1	chr19	7919491	7931135