JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTXN1_chr19_7919491_7931135	0/0	t0012	989	2	0	0	0	2	0	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	t0013	989	1	0	0	0	0	1	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	t0014	989	1	0	0	1	0	0	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	t0015	989	1	0	0	0	0	1	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	t0016	989	1	1	0	0	0	0	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	t0017	989	1	1	0	0	0	0	copy fasta	CTXN1	chr19	7919491	7931135
CTXN2_chr15_48186665_48208758	0/1	t0001	2459	172	34	24	92	2	19	copy fasta	CTXN2	chr15	48186665	48208758
CTXN2_chr15_48186665_48208758	1/0	t0002	2459	124	46	4	64	0	9	copy fasta	CTXN2	chr15	48186665	48208758
CTXN2_chr15_48186665_48208758	0/0	t0003	2459	4	0	4	0	0	0	copy fasta	CTXN2	chr15	48186665	48208758
CTXN2_chr15_48186665_48208758	0/0	t0004	2459	2	0	0	2	0	0	copy fasta	CTXN2	chr15	48186665	48208758
CTXN2_chr15_48186665_48208758	0/0	t0005	2459	2	2	0	0	0	0	copy fasta	CTXN2	chr15	48186665	48208758
CTXN2_chr15_48186665_48208758	0/0	t0006	2459	1	1	0	0	0	0	copy fasta	CTXN2	chr15	48186665	48208758
CTXN2_chr15_48186665_48208758	0/0	t0007	2459	1	1	0	0	0	0	copy fasta	CTXN2	chr15	48186665	48208758
CTXN2_chr15_48186665_48208758	0/0	t0008	2459	1	0	0	1	0	0	copy fasta	CTXN2	chr15	48186665	48208758
CTXN2_chr15_48186665_48208758	0/0	t0009	2459	1	0	0	1	0	0	copy fasta	CTXN2	chr15	48186665	48208758
CTXN3_chr5_127644082_127663630	1/0	t0001	1377	138	25	21	74	4	13	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0002	1377	134	38	15	57	5	19	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/1	t0003	1377	116	5	21	71	8	10	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0004	1377	21	1	12	8	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0005	1377	21	18	3	0	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0006	1377	13	0	2	9	0	2	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0007	1377	9	0	0	9	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0008	1377	4	4	0	0	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0009	1377	2	0	2	0	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0010	1377	2	0	0	2	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0011	1377	1	0	0	0	0	1	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0012	1377	1	0	0	0	0	1	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0013	1377	1	0	0	1	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0014	1377	1	0	0	1	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0015	1377	1	0	0	0	1	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0016	1377	1	1	0	0	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0017	1377	1	1	0	0	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0018	1377	1	0	0	1	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0019	1377	1	1	0	0	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0020	1377	1	0	0	1	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0021	1377	1	1	0	0	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	t0022	1377	1	1	0	0	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXND1_chr15_80190481_80257213	1/0	t0001	6714	53	9	21	15	0	7	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0002	6714	53	2	10	37	1	3	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/1	t0003	6714	48	4	6	30	1	6	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0004	6714	38	10	6	15	0	7	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0005	6714	27	0	3	18	0	6	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0006	6714	16	0	3	10	1	2	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0007	6713	14	1	1	8	0	4	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0008	6714	12	3	3	4	0	2	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0009	6714	10	0	1	7	0	2	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0010	6714	10	0	3	4	0	3	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0011	6714	6	4	2	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0012	6713	6	0	1	5	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0013	6714	5	5	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213