Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADH1B_chr4_99299971_99326401	0/0	t0023	2939	3	3	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0024	2937	3	1	1	1	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0025	2939	3	0	1	1	1	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0026	2909	3	3	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0027	2945	3	3	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0028	2961	3	3	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0029	2940	3	3	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0030	2930	3	0	0	1	0	2	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0031	2938	3	0	2	0	0	1	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0032	2934	3	0	1	0	2	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0033	2933	2	0	2	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0034	2929	2	0	2	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0035	2935	2	0	0	0	0	2	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0036	2951	2	2	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0037	2934	2	0	0	2	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0038	2930	2	2	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0039	2853	2	2	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0040	2936	2	2	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0041	2938	2	0	0	2	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0042	2940	2	0	1	1	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	1/0	t0043	2940	2	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0044	2915	2	2	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0045	2939	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0046	2931	1	0	0	1	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0047	2909	1	0	1	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/1	t0048	2911	1	0	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0049	2925	1	0	1	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0050	2933	1	0	1	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0051	2935	1	0	1	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0052	2931	1	0	1	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0053	2936	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0054	2951	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0055	2947	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0056	2953	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0057	2953	1	0	1	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0058	2947	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0059	2940	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0060	2949	1	0	1	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0061	2950	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0062	2944	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0063	2951	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0064	2961	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0065	2971	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0066	2969	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0067	2936	1	0	0	0	1	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0068	2940	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0069	2938	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0070	2855	1	0	0	0	0	1	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0071	2930	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0072	2922	1	0	0	0	0	1	copy fasta	ADH1B	chr4	99299971	99326401