JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTXND1_chr15_80190481_80257213	0/0	t0014	6714	5	4	1	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0015	6714	4	4	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0016	6714	3	2	1	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0017	6714	3	0	0	3	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0018	6714	3	0	1	0	2	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0019	6714	3	0	0	3	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0020	6714	2	0	2	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0021	6714	2	2	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0022	6714	2	0	0	2	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0023	6714	2	2	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0024	6714	2	2	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0025	6714	2	2	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0026	6714	2	0	1	0	1	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0027	6713	2	1	1	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0028	6714	2	2	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0029	6714	2	2	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0030	6714	2	0	0	2	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0031	6714	2	2	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0032	6714	2	2	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0033	6714	2	0	2	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0034	6714	1	0	0	0	0	1	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0035	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0036	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0037	6714	1	0	1	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0038	6714	1	0	0	1	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0039	6714	1	0	0	0	0	1	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0040	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0041	6714	1	0	0	0	0	1	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0042	6713	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0043	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0044	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0045	6713	1	0	0	0	0	1	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0046	6714	1	0	0	1	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0047	6713	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0048	6714	1	0	0	1	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0049	6714	1	0	0	1	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0050	6714	1	0	1	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0051	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0052	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0053	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0054	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0055	6714	1	0	1	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0056	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0057	6714	1	0	0	0	0	1	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0058	6714	1	0	0	1	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0059	6714	1	0	1	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0060	6714	1	0	0	1	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0061	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0062	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0063	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213