JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTXND1_chr15_80190481_80257213	0/0	t0064	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0065	6714	1	0	0	1	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0066	6713	1	0	0	1	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0067	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0068	6714	1	0	0	1	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0069	6714	1	0	0	1	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0070	6714	1	0	0	1	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0071	6714	1	0	0	1	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0072	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0073	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0074	6714	1	0	0	0	0	1	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0075	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0076	6714	1	0	1	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0077	6713	1	0	0	1	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0078	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0079	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0080	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0081	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	t0082	6714	1	1	0	0	0	0	copy fasta	CTXND1	chr15	80190481	80257213
CTXND2_chr1_150882136_150918292	1/1	t0001	1062	279	77	41	118	14	27	copy fasta	CTXND2	chr1	150882136	150918292
CTXND2_chr1_150882136_150918292	0/0	t0002	1062	74	0	14	45	4	11	copy fasta	CTXND2	chr1	150882136	150918292
CTXND2_chr1_150882136_150918292	0/0	t0003	1062	11	11	0	0	0	0	copy fasta	CTXND2	chr1	150882136	150918292
CTXND2_chr1_150882136_150918292	0/0	t0004	1062	3	0	0	0	0	3	copy fasta	CTXND2	chr1	150882136	150918292
CTXND2_chr1_150882136_150918292	0/0	t0005	1062	1	0	1	0	0	0	copy fasta	CTXND2	chr1	150882136	150918292
CTXND2_chr1_150882136_150918292	0/0	t0006	1062	1	0	0	1	0	0	copy fasta	CTXND2	chr1	150882136	150918292
CTXND2_chr1_150882136_150918292	0/0	t0007	1062	1	1	0	0	0	0	copy fasta	CTXND2	chr1	150882136	150918292
CTXND2_chr1_150882136_150918292	0/0	t0008	1062	1	1	0	0	0	0	copy fasta	CTXND2	chr1	150882136	150918292
CTXND2_chr1_150882136_150918292	0/0	t0009	1062	1	0	0	0	0	1	copy fasta	CTXND2	chr1	150882136	150918292
CUBN_chr10_16818966_17134811	1/1	t0001	1056	92	44	13	12	2	19	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	t0002	1056	46	17	7	18	0	4	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	t0003	1056	38	3	14	15	2	4	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	t0004	1056	3	3	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	t0005	1056	3	3	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	t0006	1056	2	2	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	t0007	1056	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	t0008	1056	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	t0009	1056	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	t0010	1056	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	t0011	1056	1	0	0	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	t0012	1056	1	0	0	0	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	t0013	1056	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	t0014	1056	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUEDC1_chr17_57856243_57960412	0/1	t0001	2550	51	11	18	11	3	7	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0002	2549	35	20	4	4	1	6	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0003	2551	20	2	6	3	1	8	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0004	2549	14	1	6	2	2	3	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	1/0	t0005	2550	11	7	0	0	1	2	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0006	2541	10	9	1	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0007	2550	8	5	0	0	2	1	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0008	2550	7	5	1	0	1	0	copy fasta	CUEDC1	chr17	57856243	57960412