JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CUEDC1_chr17_57856243_57960412	0/0	t0009	2550	6	3	0	1	0	2	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0010	2549	5	4	1	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0011	2549	5	1	4	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0012	2551	4	2	0	0	0	2	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0013	2549	4	4	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0014	2550	3	0	3	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0015	2550	2	2	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0016	2549	2	0	1	0	0	1	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0017	2550	2	2	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0018	2550	1	1	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0019	2548	1	1	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0020	2551	1	0	1	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0021	2541	1	1	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0022	2550	1	1	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0023	2550	1	1	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0024	2549	1	0	0	0	0	1	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0025	2550	1	1	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0026	2549	1	1	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0027	2550	1	1	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0028	2549	1	1	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0029	2549	1	1	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0030	2549	1	0	0	0	1	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0031	2550	1	0	0	0	0	1	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0032	2549	1	1	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0033	2550	1	0	0	0	0	1	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0034	2551	1	0	1	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0035	2550	1	0	0	0	0	1	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0036	2550	1	0	1	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0037	2549	1	0	0	1	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0038	2550	1	0	0	1	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0039	2550	1	1	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	t0040	2550	1	0	0	1	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC2_chr10_102418249_102437574	1/0	t0001	237	282	75	52	121	10	23	copy fasta	CUEDC2	chr10	102418249	102437574
CUEDC2_chr10_102418249_102437574	0/1	t0002	237	105	9	24	47	4	20	copy fasta	CUEDC2	chr10	102418249	102437574
CUEDC2_chr10_102418249_102437574	0/0	t0003	237	1	0	0	0	0	1	copy fasta	CUEDC2	chr10	102418249	102437574
CUEDC2_chr10_102418249_102437574	0/0	t0004	237	1	0	0	1	0	0	copy fasta	CUEDC2	chr10	102418249	102437574
CUEDC2_chr10_102418249_102437574	0/0	t0005	237	1	0	0	1	0	0	copy fasta	CUEDC2	chr10	102418249	102437574
CUL1_chr7_148693903_148806110	1/1	t0001	817	327	83	68	132	10	32	copy fasta	CUL1	chr7	148693903	148806110
CUL1_chr7_148693903_148806110	0/0	t0002	817	9	8	1	0	0	0	copy fasta	CUL1	chr7	148693903	148806110
CUL1_chr7_148693903_148806110	0/0	t0003	817	1	0	1	0	0	0	copy fasta	CUL1	chr7	148693903	148806110
CUL1_chr7_148693903_148806110	0/0	t0004	817	1	1	0	0	0	0	copy fasta	CUL1	chr7	148693903	148806110
CUL2_chr10_35003551_35095341	0/0	t0001	1948	81	25	19	29	4	4	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0002	1948	38	1	0	36	0	1	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0003	1950	26	1	8	13	0	4	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0004	1946	25	2	13	0	5	5	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0005	1946	21	1	10	6	1	3	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0006	1943	12	9	3	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	1/0	t0007	1946	12	7	1	1	0	2	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0008	1950	11	1	0	9	0	1	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0009	1945	10	10	0	0	0	0	copy fasta	CUL2	chr10	35003551	35095341