JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CUL2_chr10_35003551_35095341	0/0	t0010	1948	9	0	0	0	0	9	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0011	1947	6	2	1	1	0	2	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0012	1948	6	6	0	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/1	t0013	1948	5	0	0	0	0	4	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0014	1947	4	0	0	4	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0015	1950	4	3	1	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0016	1952	3	2	1	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0017	1946	2	0	0	2	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0018	1946	2	1	0	0	0	1	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0019	1949	2	2	0	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0020	1947	2	1	1	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0021	1945	1	0	0	0	0	1	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0022	1947	1	0	1	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0023	1951	1	0	0	1	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0024	1949	1	0	0	1	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0025	1934	1	0	0	1	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0026	1946	1	1	0	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0027	1946	1	1	0	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0028	1946	1	0	1	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0029	1944	1	1	0	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0030	1944	1	0	0	1	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0031	1946	1	1	0	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0032	1952	1	1	0	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0033	1975	1	0	0	1	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0034	1946	1	1	0	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0035	1949	1	0	0	0	0	1	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0036	1952	1	1	0	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0037	1948	1	1	0	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0038	1952	1	1	0	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	t0039	1950	1	1	0	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL3_chr2_224465150_224590363	0/1	t0001	4450	110	21	23	45	5	15	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0002	4444	82	4	15	54	4	5	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0003	4443	64	1	7	43	1	12	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0004	4443	27	20	4	0	1	2	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0005	4450	20	0	0	20	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0006	4450	15	14	1	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0007	4450	9	0	2	7	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0008	4459	8	8	0	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0009	4445	7	0	0	7	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0010	4444	6	5	0	0	1	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0011	4443	4	4	0	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0012	4443	4	0	3	0	1	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0013	4444	3	3	0	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0014	4444	3	1	0	2	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0015	4448	3	3	0	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0016	4443	2	1	1	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0017	4450	1	0	0	1	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0018	4444	1	0	0	1	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0019	4444	1	1	0	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0020	4444	1	1	0	0	0	0	copy fasta	CUL3	chr2	224465150	224590363