JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CUL3_chr2_224465150_224590363	0/0	t0021	4444	1	0	0	1	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0022	4450	1	0	0	1	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0023	4450	1	1	0	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0024	4450	1	1	0	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0025	4450	1	1	0	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0026	4450	1	1	0	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0027	4450	1	1	0	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	1/0	t0028	4450	1	0	0	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0029	4450	1	0	0	1	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0030	4450	1	0	0	1	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	t0031	4450	1	0	0	0	1	0	copy fasta	CUL3	chr2	224465150	224590363
CUL4A_chr13_113204613_113272108	0/1	t0001	3541	244	27	48	126	14	28	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0002	3544	39	0	2	37	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0003	3541	24	1	11	0	2	10	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0004	3541	23	17	5	1	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	1/0	t0005	3542	13	11	1	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0006	3541	12	11	1	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0007	3537	6	6	0	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0008	3541	6	1	3	0	1	1	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0009	3541	4	0	0	4	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0010	3544	4	0	0	4	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0011	3544	4	0	0	4	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0012	3537	3	3	0	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0013	3541	2	0	0	2	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0014	3541	2	0	2	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0015	3541	2	0	1	0	1	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0016	3541	1	1	0	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0017	3541	1	1	0	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0018	3537	1	0	0	1	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0019	3541	1	1	0	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0020	3541	1	1	0	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0021	3541	1	0	0	0	0	1	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0022	3542	1	1	0	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	t0023	3544	1	0	0	1	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4B_chrX_120518858_120565962	1/1	t0001	3228	229	27	42	124	11	23	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0002	3228	16	12	4	0	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0003	3228	15	15	0	0	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0004	3224	4	3	1	0	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0005	3229	2	0	1	0	0	1	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0006	3228	2	2	0	0	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0007	3227	1	1	0	0	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0008	3228	1	0	0	1	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0009	3228	1	0	0	1	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0010	3226	1	0	0	1	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0011	3228	1	1	0	0	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0012	3228	1	0	0	1	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0013	3223	1	1	0	0	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0014	3228	1	1	0	0	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0015	3227	1	0	0	1	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	t0016	3229	1	1	0	0	0	0	copy fasta	CUL4B	chrX	120518858	120565962