JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CUL5_chr11_108003898_108112761	0/1	t0001	3829	167	21	23	99	3	20	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0002	3830	27	9	4	8	0	6	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0003	3828	23	5	8	3	4	3	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0004	3827	13	11	2	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0005	3830	8	8	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0006	3828	8	7	1	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0007	3829	6	6	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0008	3829	5	0	5	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0009	3828	5	0	2	0	1	2	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0010	3828	5	2	1	0	0	2	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0011	3827	5	5	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0012	3828	4	1	1	2	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0013	3829	4	3	0	1	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0014	3828	3	3	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0015	3829	3	3	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0016	3829	3	0	3	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0017	3829	3	0	1	0	2	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0018	3829	2	0	0	2	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0019	3842	1	0	0	0	0	1	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0020	3829	1	0	0	1	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0021	3828	1	1	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0022	3829	1	0	1	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0023	3828	1	1	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0024	3829	1	0	0	0	0	1	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0025	3829	1	0	1	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0026	3829	1	0	0	1	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0027	3830	1	0	0	0	0	1	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0028	3829	1	1	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0029	3830	1	0	0	1	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0030	3829	1	0	1	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0031	3829	1	0	0	1	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0032	3827	1	1	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0033	3829	1	0	0	1	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0034	3829	1	1	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	t0035	3827	1	1	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	1/0	t0036	3829	1	0	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL7_chr6_43032617_43058851	1/1	t0001	310	237	71	49	79	11	25	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	t0002	310	59	14	11	30	1	3	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	t0003	310	2	2	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	t0004	310	2	2	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	t0005	310	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	t0006	310	1	0	0	1	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL9_chr6_43177196_43229587	1/1	t0001	206	249	71	39	108	8	21	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	t0002	206	27	19	3	4	0	1	copy fasta	CUL9	chr6	43177196	43229587
CUTA_chr6_33411442_33423107	0/1	t0001	316	333	92	65	127	14	34	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	t0002	316	5	0	5	0	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	t0003	316	1	0	0	1	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTC_chr10_99727234_99761134	1/1	t0001	511	408	85	78	184	14	45	copy fasta	CUTC	chr10	99727234	99761134
CUTC_chr10_99727234_99761134	0/0	t0002	511	1	1	0	0	0	0	copy fasta	CUTC	chr10	99727234	99761134
CUTC_chr10_99727234_99761134	0/0	t0003	511	1	0	0	0	0	1	copy fasta	CUTC	chr10	99727234	99761134