JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CUX1_chr7_101811007_102288958	0/1	t0001	893	106	51	22	14	4	14	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	1/0	t0002	893	10	1	6	1	0	1	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	t0003	893	3	3	0	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	t0004	893	3	3	0	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	t0005	893	2	2	0	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	t0006	893	1	0	0	1	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	t0007	893	1	1	0	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	t0008	893	1	1	0	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	t0009	893	1	0	0	0	0	1	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	t0010	893	1	1	0	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	t0011	893	1	1	0	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	t0012	893	1	1	0	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	t0013	893	1	1	0	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101812626_102263233	0/1	t0001	9207	24	6	7	2	1	7	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0002	9207	5	2	0	1	1	1	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0003	9207	5	5	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0004	9208	4	4	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0005	9209	4	4	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0006	9208	4	0	4	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0007	9207	3	0	2	0	0	1	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0008	9209	3	0	3	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0009	9208	3	2	0	0	0	1	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0010	9206	3	3	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0011	9209	3	3	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0012	9207	3	3	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0013	9207	2	2	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0014	9207	2	0	0	2	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0015	9206	2	2	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0016	9207	2	2	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0017	9207	2	2	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0018	9207	2	0	1	0	1	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0019	9207	2	2	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0020	9207	2	2	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0021	9205	2	2	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0022	9208	2	0	2	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0023	9208	2	0	1	1	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0024	9207	2	0	2	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0025	9207	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0026	9207	1	0	0	1	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0027	9207	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0028	9207	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0029	9208	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	1/0	t0030	9206	1	0	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0031	9207	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0032	9207	1	0	0	1	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0033	9207	1	0	1	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0034	9207	1	0	0	1	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0035	9209	1	0	0	0	0	1	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0036	9208	1	0	1	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0037	9209	1	0	0	1	0	0	copy fasta	CUX1	chr7	101812626	102263233