JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CUX1_chr7_101812626_102263233	0/0	t0038	9210	1	0	0	1	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0039	9208	1	0	0	0	0	1	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0040	9207	1	0	0	0	0	1	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0041	9207	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0042	9208	1	0	0	0	0	1	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0043	9207	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0044	9208	1	0	1	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0045	9207	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0046	9206	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0047	9207	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0048	9206	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0049	9208	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0050	9208	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0051	9207	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0052	9208	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0053	9207	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0054	9207	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0055	9207	1	0	1	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0056	9209	1	0	0	0	0	1	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0057	9207	1	0	0	0	0	1	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0058	9208	1	0	0	0	0	1	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0059	9207	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0060	9209	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0061	9208	1	0	1	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0062	9207	1	0	0	0	1	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0063	9207	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0064	9208	1	0	1	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0065	9208	1	0	1	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0066	9207	1	0	0	1	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0067	9208	1	0	1	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0068	9207	1	0	0	0	0	1	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0069	9208	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0070	9207	1	0	0	1	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0071	9206	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	t0072	9206	1	0	0	1	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX2_chr12_111029165_111355554	0/0	t0001	2243	65	54	5	2	0	4	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	1/1	t0002	2243	19	10	4	0	0	3	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	t0003	2243	5	4	1	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	t0004	2242	4	4	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	t0005	2243	3	2	0	0	0	1	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	t0006	2243	1	1	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	t0007	2243	1	1	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	t0008	2243	1	1	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	t0009	2243	1	1	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUZD1_chr10_122827158_122850857	1/1	t0001	135	422	88	78	190	18	46	copy fasta	CUZD1	chr10	122827158	122850857
CWC15_chr11_94957620_94978556	1/1	t0001	833	229	42	41	114	5	25	copy fasta	CWC15	chr11	94957620	94978556
CWC15_chr11_94957620_94978556	0/0	t0002	834	150	38	29	64	6	13	copy fasta	CWC15	chr11	94957620	94978556
CWC15_chr11_94957620_94978556	0/0	t0003	833	8	1	2	4	0	1	copy fasta	CWC15	chr11	94957620	94978556
CWC15_chr11_94957620_94978556	0/0	t0004	833	5	4	1	0	0	0	copy fasta	CWC15	chr11	94957620	94978556
CWC15_chr11_94957620_94978556	0/0	t0005	831	3	0	0	0	0	3	copy fasta	CWC15	chr11	94957620	94978556