JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CWC15_chr11_94957620_94978556	0/0	t0006	831	3	3	0	0	0	0	copy fasta	CWC15	chr11	94957620	94978556
CWC15_chr11_94957620_94978556	0/0	t0007	834	3	3	0	0	0	0	copy fasta	CWC15	chr11	94957620	94978556
CWC15_chr11_94957620_94978556	0/0	t0008	833	2	2	0	0	0	0	copy fasta	CWC15	chr11	94957620	94978556
CWC15_chr11_94957620_94978556	0/0	t0009	834	2	2	0	0	0	0	copy fasta	CWC15	chr11	94957620	94978556
CWC15_chr11_94957620_94978556	0/0	t0010	833	1	1	0	0	0	0	copy fasta	CWC15	chr11	94957620	94978556
CWC15_chr11_94957620_94978556	0/0	t0011	833	1	0	0	0	1	0	copy fasta	CWC15	chr11	94957620	94978556
CWC15_chr11_94957620_94978556	0/0	t0012	833	1	0	0	1	0	0	copy fasta	CWC15	chr11	94957620	94978556
CWC15_chr11_94957620_94978556	0/0	t0013	834	1	0	1	0	0	0	copy fasta	CWC15	chr11	94957620	94978556
CWC15_chr11_94957620_94978556	0/0	t0014	834	1	0	0	1	0	0	copy fasta	CWC15	chr11	94957620	94978556
CWC22_chr2_179939876_180012297	1/1	t0001	798	188	49	25	84	8	20	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	t0002	798	176	36	33	90	5	12	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	t0003	798	3	0	1	0	1	1	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	t0004	798	2	2	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	t0005	798	2	0	0	2	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	t0006	798	1	0	1	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	t0007	798	1	0	0	1	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	t0008	798	1	0	0	0	0	1	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	t0009	798	1	1	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	t0010	798	1	0	0	1	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC25_chr17_38795441_38830321	0/0	t0001	1790	87	5	31	30	7	14	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0002	1791	76	8	19	40	2	7	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0003	1790	67	23	7	27	2	8	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/1	t0004	1789	59	0	3	52	0	3	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0005	1792	49	29	1	15	0	4	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0006	1791	8	8	0	0	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0007	1790	7	7	0	0	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0008	1792	7	7	0	0	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0009	1790	4	0	2	0	0	2	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0010	1790	2	0	0	2	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0011	1791	2	0	0	2	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0012	1791	2	2	0	0	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0013	1791	2	0	0	2	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0014	1790	2	1	1	0	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0015	1790	1	0	1	0	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0016	1790	1	0	0	1	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0017	1790	1	0	0	1	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0018	1791	1	1	0	0	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0019	1792	1	0	0	1	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0020	1791	1	0	1	0	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0021	1791	1	1	0	0	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0022	1789	1	0	0	0	1	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	t0023	1791	1	0	0	1	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC27_chr5_64763930_65023750	1/1	t0001	647	128	11	31	56	12	16	copy fasta	CWC27	chr5	64763930	65023750
CWC27_chr5_64763930_65023750	0/0	t0002	647	125	59	9	45	2	10	copy fasta	CWC27	chr5	64763930	65023750
CWC27_chr5_64763930_65023750	0/0	t0003	647	6	0	0	6	0	0	copy fasta	CWC27	chr5	64763930	65023750
CWC27_chr5_64763930_65023750	0/0	t0004	647	1	0	0	1	0	0	copy fasta	CWC27	chr5	64763930	65023750
CWF19L1_chr10_100227298_100272638	1/1	t0001	975	296	56	61	147	6	24	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	t0002	975	24	16	0	6	2	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	t0003	976	19	0	0	16	0	3	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	t0004	975	17	16	1	0	0	0	copy fasta	CWF19L1	chr10	100227298	100272638