JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CWF19L1_chr10_100227298_100272638	0/0	t0005	975	3	0	0	0	0	3	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	t0006	975	2	0	0	2	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	t0007	975	1	1	0	0	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	t0008	975	1	0	0	1	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	t0009	975	1	1	0	0	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L2_chr11_107321360_107462825	0/0	t0001	560	105	28	18	45	2	12	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	t0002	560	102	37	13	48	3	1	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	t0003	560	94	20	12	46	5	11	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	1/1	t0004	560	60	1	15	25	3	14	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	t0005	560	18	0	3	14	1	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	t0006	560	4	4	0	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	t0007	560	3	2	1	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	t0008	560	3	0	0	3	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	t0009	560	1	0	1	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	t0010	560	1	0	1	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	t0011	560	1	0	0	1	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWH43_chr4_48981275_49067079	1/1	t0001	345	291	66	60	116	16	31	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	t0002	345	3	0	0	2	0	1	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	t0003	345	1	1	0	0	0	0	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	t0004	345	1	1	0	0	0	0	copy fasta	CWH43	chr4	48981275	49067079
CX3CL1_chr16_57367490_57390044	0/0	t0001	2092	209	28	41	105	12	23	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	1/1	t0002	2092	108	8	20	65	1	12	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	t0003	2092	48	43	3	0	2	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	t0004	2092	31	0	0	25	0	6	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	t0005	2092	11	5	4	0	0	2	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	t0006	2092	6	6	0	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	t0007	2092	6	0	3	2	1	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	t0008	2092	2	2	0	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	t0009	2095	2	2	0	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	t0010	2092	1	0	1	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	t0011	2107	1	0	0	0	0	1	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	t0012	2095	1	1	0	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	t0013	2092	1	0	0	1	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	t0014	2092	1	0	0	1	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	t0015	2102	1	0	0	1	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	t0016	2092	1	1	0	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CR1_chr3_39258496_39285036	0/0	t0001	2039	278	42	49	140	11	36	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/1	t0002	2039	53	12	21	8	2	9	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0003	2039	21	0	2	17	0	2	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	1/0	t0004	2039	21	19	1	0	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0005	2039	10	3	4	0	1	2	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0006	2039	6	5	1	0	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0007	2039	6	4	2	0	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0008	2039	5	5	0	0	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0009	2039	5	0	0	5	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0010	2039	4	4	0	0	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0011	2039	2	2	0	0	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0012	2039	2	0	0	2	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0013	2039	1	0	0	1	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0014	2039	1	0	1	0	0	0	copy fasta	CX3CR1	chr3	39258496	39285036