Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCA9_chr17_68969488_69065927	1/0	t0001	1503	125	22	15	60	8	19	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/1	t0002	1499	116	11	24	60	6	14	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	t0003	1499	41	35	5	0	0	1	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	t0004	1499	12	11	0	0	0	1	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	t0005	1497	5	2	3	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	t0006	1497	3	3	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	t0007	1499	2	0	2	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	t0008	1503	2	0	2	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	t0009	1503	1	0	0	1	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	t0010	1503	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	t0011	1503	1	0	0	1	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	t0012	1503	1	0	1	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	t0013	1499	1	0	0	0	0	1	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	t0014	1499	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCB10_chr1_229511582_229563707	1/0	t0001	1653	186	58	45	49	9	24	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/1	t0002	1653	55	1	24	21	2	6	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	t0003	1653	19	16	1	1	1	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	t0004	1649	8	7	1	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	t0005	1653	6	5	1	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	t0006	1653	4	0	0	4	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	t0007	1653	2	2	0	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	t0008	1653	2	2	0	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	t0009	1653	1	1	0	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	t0010	1653	1	0	0	1	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB11_chr2_168915781_169036324	0/0	t0001	2965	127	19	25	61	2	20	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0002	2970	40	0	3	34	0	3	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	1/1	t0003	2969	23	1	14	3	1	2	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0004	2970	21	20	1	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0005	2969	18	6	5	5	1	1	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0006	2970	14	13	1	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0007	2970	10	10	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0008	2963	5	4	1	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0009	2969	4	4	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0010	2965	4	0	0	4	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0011	2969	3	3	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0012	2969	3	0	1	0	1	1	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0013	2970	3	0	0	3	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0014	2965	3	0	2	0	0	1	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0015	2970	3	0	0	3	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0016	2970	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0017	2966	2	1	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0018	2965	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0019	2970	1	0	0	0	0	1	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0020	2965	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0021	2969	1	0	0	0	0	1	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0022	2970	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0023	2969	1	0	0	0	0	1	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0024	2969	1	0	0	0	0	1	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0025	2969	1	0	0	0	1	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0026	2963	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324