Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADH1B_chr4_99299971_99326401	0/0	t0073	2928	1	0	0	1	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0074	2934	1	0	1	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0075	2938	1	0	1	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0076	2933	1	0	0	0	0	1	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0077	2953	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0078	2924	1	0	0	1	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0079	2925	1	0	0	1	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0080	2936	1	0	1	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0081	2934	1	0	0	1	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0082	2944	1	0	1	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0083	2929	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0084	2929	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	t0085	2933	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1C_chr4_99331497_99357746	1/1	t0001	327	335	96	64	122	16	35	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	t0002	327	23	2	8	11	0	2	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	t0003	327	1	0	0	0	0	1	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	t0004	327	1	0	0	1	0	0	copy fasta	ADH1C	chr4	99331497	99357746
ADH4_chr4_99118658_99149297	0/0	t0001	860	285	63	53	134	10	25	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	1/1	t0002	860	28	4	17	0	4	1	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	t0003	860	22	21	1	0	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	t0004	860	1	1	0	0	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	t0005	860	1	1	0	0	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	t0006	860	1	0	1	0	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH5_chr4_99065978_99093788	0/0	t0001	1528	275	50	56	131	9	29	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	1/0	t0002	1528	16	9	5	0	0	1	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	t0003	1528	15	4	6	0	4	1	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	t0004	1528	14	14	0	0	0	0	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	t0005	1528	4	0	3	0	1	0	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	t0006	1528	4	4	0	0	0	0	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	t0007	1528	2	2	0	0	0	0	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	t0008	1528	1	1	0	0	0	0	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	t0009	1528	1	1	0	0	0	0	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/1	t0010	1528	1	0	0	0	0	0	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	t0011	1528	1	1	0	0	0	0	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	t0012	1528	1	0	0	0	0	1	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	t0013	1528	1	0	0	1	0	0	copy fasta	ADH5	chr4	99065978	99093788
ADH6_chr4_99197639_99224246	0/0	t0001	1675	198	67	32	79	5	15	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	1/0	t0002	1675	91	11	25	32	3	19	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/1	t0003	1675	15	3	11	0	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	t0004	1675	2	2	0	0	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	t0005	1675	2	2	0	0	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	t0006	1675	1	1	0	0	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	t0007	1675	1	1	0	0	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	t0008	1675	1	1	0	0	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	t0009	1675	1	0	0	1	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH7_chr4_99407263_99440342	0/0	t0001	995	125	7	9	98	1	10	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	1/0	t0002	995	96	9	29	43	2	12	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0003	995	69	32	11	10	5	11	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0004	995	39	33	6	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0005	995	29	4	7	14	1	3	copy fasta	ADH7	chr4	99407263	99440342