JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CX3CR1_chr3_39258496_39285036	0/0	t0015	2039	1	0	0	1	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0016	2385	1	0	0	1	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0017	2039	1	0	0	1	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0018	2039	1	0	0	0	0	1	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	t0019	2039	1	0	1	0	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CXADR_chr21_17508043_17575100	0/0	t0001	4498	75	3	13	45	4	10	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0002	4497	51	16	3	19	1	12	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0003	4495	47	4	10	23	1	9	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0004	4496	12	0	0	12	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0005	4497	12	8	4	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0006	4495	10	8	2	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0007	4498	9	0	5	1	1	2	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0008	4494	8	0	0	7	0	1	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0009	4497	7	7	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/1	t0010	4496	7	2	3	0	0	1	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0011	4489	6	6	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0012	4498	5	0	0	5	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0013	4497	4	4	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0014	4496	4	3	1	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0015	4497	3	0	1	1	0	1	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0016	4492	3	0	1	1	0	1	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0017	4496	3	3	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0018	4497	3	3	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0019	4498	2	0	0	2	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0020	4494	2	0	0	2	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0021	4494	2	0	0	2	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0022	4498	2	0	1	0	1	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0023	4498	2	0	0	2	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0024	4499	2	0	2	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0025	4499	2	0	0	2	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0026	4498	2	0	0	2	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0027	4494	2	1	1	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0028	4496	2	2	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0029	4494	2	0	0	1	1	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0030	4496	2	1	1	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0031	4497	2	2	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0032	4497	2	1	1	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0033	4498	2	1	0	0	1	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0034	4494	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0035	4494	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0036	4495	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0037	4496	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0038	4495	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0039	4494	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0040	4489	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0041	4498	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0042	4497	1	0	0	0	1	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0043	4497	1	0	1	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0044	4498	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0045	4498	1	0	1	0	0	0	copy fasta	CXADR	chr21	17508043	17575100