JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CXADR_chr21_17508043_17575100	0/0	t0046	4497	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0047	4498	1	0	1	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0048	4498	1	0	0	0	0	1	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0049	4498	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0050	4499	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0051	4500	1	0	0	0	0	1	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0052	4498	1	0	0	0	1	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0053	4496	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0054	4496	1	0	1	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0055	4497	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0056	4497	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0057	4493	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0058	4496	1	0	0	0	0	1	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0059	4491	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0060	4492	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0061	4499	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0062	4494	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0063	4496	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0064	4495	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0065	4496	1	0	1	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0066	4494	1	0	0	0	0	1	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0067	4496	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0068	4492	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0069	4494	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0070	4497	1	0	0	0	0	1	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0071	4496	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0072	4493	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0073	4494	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0074	4498	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0075	4496	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0076	4496	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0077	4496	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0078	4496	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0079	4498	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	1/0	t0080	4496	1	0	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0081	4496	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0082	4495	1	0	0	0	0	1	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0083	4498	1	0	1	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0084	4496	1	0	0	0	0	1	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0085	4495	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	t0086	4496	1	0	1	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXCL10_chr4_76016118_76028497	0/0	t0001	878	323	66	57	173	5	22	copy fasta	CXCL10	chr4	76016118	76028497
CXCL10_chr4_76016118_76028497	1/1	t0002	879	89	23	17	16	9	22	copy fasta	CXCL10	chr4	76016118	76028497
CXCL10_chr4_76016118_76028497	0/0	t0003	878	3	0	0	3	0	0	copy fasta	CXCL10	chr4	76016118	76028497
CXCL10_chr4_76016118_76028497	0/0	t0004	876	3	3	0	0	0	0	copy fasta	CXCL10	chr4	76016118	76028497
CXCL10_chr4_76016118_76028497	0/0	t0005	879	3	0	0	0	2	1	copy fasta	CXCL10	chr4	76016118	76028497
CXCL10_chr4_76016118_76028497	0/0	t0006	878	1	0	0	1	0	0	copy fasta	CXCL10	chr4	76016118	76028497
CXCL10_chr4_76016118_76028497	0/0	t0007	878	1	0	0	1	0	0	copy fasta	CXCL10	chr4	76016118	76028497
CXCL10_chr4_76016118_76028497	0/0	t0008	878	1	0	0	0	0	1	copy fasta	CXCL10	chr4	76016118	76028497
CXCL11_chr4_76028682_76041070	0/0	t0001	1195	158	20	19	104	2	13	copy fasta	CXCL11	chr4	76028682	76041070